Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 547,694 A→G 100% pseudogene (114/261 nt)
pseudogene (114/1259 nt)
ylbE →
ylbE →
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb547,6940AG100.0% 35.6 / NA 12pseudogene (114/261 nt)
pseudogene (114/1259 nt)
ylbE
ylbE
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (8/4);  total (8/4)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTCGTCGCGCTCGTCCACACTGGCTGGATGTGCAACCGGCTTCTTCACTTATCAGCGAACTAAACGAAGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTGGCAGGAGATG  >  W3110S.gb/547627‑547742
                                                                   |                                                
ttCGTCGCGCTCGTCCACACTGGCTGGATGTGCAACCGGCTTCTTCACTTATCAGCGAACTAAACGAggg                                                >  1:111992/1‑70 (MQ=255)
ttCGTCGCGCTCGTCCACACTGGCTGGATGTGCAACCGGCTTCTTCACTTATCAGCGAACTAAACGAggg                                                >  1:1428681/1‑70 (MQ=255)
      gcgcTCGTCCACACTGGCTGGATGTGCAACCGGCTTCTTCACTTATCAGCGAACTAAACGAGGGCaaaa                                           >  1:1505592/1‑69 (MQ=255)
                              tgCAACCGGCTTCTTCACTTATCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATg                 >  1:1576777/1‑71 (MQ=255)
                                cAACCGGCTTCTTCACTTATCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATgcg               >  1:463485/1‑71 (MQ=255)
                                   ccGGCTTCTTCACTTATCAGCGAACTAAACGAGGGCAAAACACt                                       >  1:1340109/1‑44 (MQ=255)
                                   ccGGCTTCTTCACTTATCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTg            >  1:1158525/1‑71 (MQ=255)
                                       cttcttCACTTATCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATgcg               <  1:430784/64‑1 (MQ=255)
                                                 tATCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTGGCAGGAGATg  <  1:942884/67‑1 (MQ=255)
                                                  aTCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGgc                         >  1:1406047/1‑43 (MQ=255)
                                                  aTCAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTGGCAGgaga    >  1:100985/1‑64 (MQ=255)
                                                    cAGCGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCa                    >  1:174160/1‑46 (MQ=255)
                                                       cGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTGGCa         <  1:180152/54‑1 (MQ=255)
                                                       cGAACTAAACGAGGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTGGCa         <  1:952706/54‑1 (MQ=255)
                                                                   |                                                
TTCGTCGCGCTCGTCCACACTGGCTGGATGTGCAACCGGCTTCTTCACTTATCAGCGAACTAAACGAAGGCAAAACACTGCTTCACGCCGGGCCGCCAATGCGCTGGCAGGAGATG  >  W3110S.gb/547627‑547742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: