Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,210,070 C→T 53.3% S121F (TCC→TTC)  ymfS → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,210,0700CT53.3% ‑3.3 / 17.1 15S121F (TCC→TTC) ymfShypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (5/2);  new base T (5/3);  total (10/5)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAAGAAGATGAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGCCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGC  >  W3110S.gb/1210000‑1210132
                                                                      |                                                              
aaaGAAGATGAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATc                                                                >  1:1413339/1‑71 (MQ=255)
aaaGAAGATGAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATc                                                                >  1:379706/1‑71 (MQ=255)
         gAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAATgcgc                                                        >  1:1431371/1‑70 (MQ=255)
            cTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATTCAGTGCGCCAGa                                                    <  1:692194/71‑1 (MQ=255)
            cTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTgcgc                                                        >  1:1445600/1‑67 (MQ=255)
                aaCAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATTCAGTGCGCCAGATAtt                                                >  1:381331/1‑71 (MQ=255)
                    atatAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATTCAGTGCGCCAGATATTGCAt                                            <  1:754478/71‑1 (MQ=255)
                       taATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGCCAGatat                                                 >  1:1461387/1‑63 (MQ=255)
                         aTTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGCCAGATATTGAATGGCCt                                       <  1:935502/71‑1 (MQ=255)
                            tgtgGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATTCAGTGCGCCAGATATTGAATGGCCTACg                                    >  1:1584177/1‑71 (MQ=255)
                                    gATTATCTGGAAGCACTGGAACTGGTTGATACATTCAGTGCGCCAGATATTGAATGGCCTACGCCTCCgg                             >  1:51937/1‑70 (MQ=255)
                                      ttATCTGGAAGCACTGGAACTGGTTGATACATTCAGTGCGCCAGATATTGAATGGCCTACGCCTCCGGCAg                          <  1:1124771/71‑1 (MQ=255)
                                         tCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGCCAGATATTGAATGGCCTACGCCTCCGGCAGtt                        <  1:33190/70‑1 (MQ=255)
                                                     ggAACTGGTTGATACATTCAGTGCGCCAGATATTGAATGGCCTACGc                                   >  1:483519/1‑47 (MQ=255)
                                                      gAACTGGTTGATACATCCAGTGCGCCAGATATTGaa                                             >  1:1028877/1‑36 (MQ=255)
                                                               gATACATTCAGTGCGCCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGgcg   >  1:244000/1‑69 (MQ=255)
                                                               gATACATCCAGTGCGCCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGgcgc  >  1:895204/1‑70 (MQ=40)
                                                                      |                                                              
AAAGAAGATGAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGCCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGC  >  W3110S.gb/1210000‑1210132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: