Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,303,631 C→T 100% Q246Y (CAG→TAT)  oppA → oligopeptide transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,303,6310CT100.0% 50.4 / NA 18Q246Y (CAG→TAT) oppAoligopeptide transporter subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (7/11);  total (7/11)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAA  >  W3110S.gb/1303572‑1303693
                                                           |                                                              
aacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTAt                                                     <  1:821919/71‑1 (MQ=255)
  cgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCTAAAACCGTTATTAACTATGTAACCTAttt                                                   >  1:219892/1‑71 (MQ=255)
      tCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGcc                                                >  1:764849/1‑70 (MQ=255)
      tCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGcc                                                >  1:331602/1‑70 (MQ=255)
         ttCTTGAATGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTAtt                                            <  1:952971/71‑1 (MQ=255)
           cTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTAttt                                                   <  1:1297933/62‑1 (MQ=255)
                 cGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTg                                     <  1:1092140/70‑1 (MQ=255)
                          aCCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGa                           <  1:22967/71‑1 (MQ=255)
                                  gAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGa                                    <  1:189921/54‑1 (MQ=255)
                                  gAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAAcc                   >  1:787000/1‑71 (MQ=255)
                                   aacaacGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCt                                      <  1:375938/51‑1 (MQ=255)
                                         gcgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg            >  1:770703/1‑71 (MQ=255)
                                         gcgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg            >  1:1047739/1‑71 (MQ=255)
                                           gAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTa          <  1:1749864/71‑1 (MQ=255)
                                              aaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAc                              >  1:469299/1‑48 (MQ=39)
                                               aCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAgtgg      <  1:1626947/71‑1 (MQ=255)
                                                   ttattaACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGaa  <  1:1672970/71‑1 (MQ=255)
                                                   ttattaACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGaa  <  1:974544/71‑1 (MQ=255)
                                                           |                                                              
AACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAA  >  W3110S.gb/1303572‑1303693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: