| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,792,695 | C→T | 66.7% | intergenic (+24/‑214) | gabT → / → gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,792,695 | 0 | C | T | 66.7% | 7.6 / 6.1 | 12 | intergenic (+24/‑214) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base T (4/4); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATCATCAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGAC > W3110S.gb/2792635‑2792758 | gaTCATCAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTc > 1:1057956/1‑71 (MQ=255) atcatcAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCt > 1:313427/1‑71 (MQ=255) ttttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTgc < 1:85293/51‑1 (MQ=255) ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGGTGCGCGTCTTGTCCGGCCTTCggg > 1:1139043/1‑70 (MQ=38) ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTc > 1:84772/1‑59 (MQ=255) ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACggg > 1:1109997/1‑70 (MQ=255) ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACggg > 1:1136877/1‑70 (MQ=255) tgatgaGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCTTGTCCGGCCTACgggg < 1:940752/70‑1 (MQ=255) gCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGAt < 1:161896/71‑1 (MQ=255) gTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAg < 1:1041898/71‑1 (MQ=255) gAGGCGATGCTGCGCGTCTTGTCCGGCCTACGGGGAGCCAGGTCGGATAAGGCGTTTACGCCGCATCCGAc < 1:935050/71‑1 (MQ=255) ggCGATGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGtt < 1:1104934/54‑1 (MQ=255) | GATCATCAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGAC > W3110S.gb/2792635‑2792758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |