Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 2,792,695 C→T 66.7% intergenic (+24/‑214) gabT → / → gabP 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb2,792,6950CT66.7% 7.6 / 6.1 12intergenic (+24/‑214)gabT/gabP4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter
Reads supporting (aligned to +/- strand):  ref base C (2/2);  new base T (4/4);  total (6/6)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GATCATCAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGAC  >  W3110S.gb/2792635‑2792758
                                                            |                                                               
gaTCATCAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTc                                                       >  1:1057956/1‑71 (MQ=255)
 atcatcAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCt                                                      >  1:313427/1‑71 (MQ=255)
               ttttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTgc                                                            <  1:85293/51‑1 (MQ=255)
                 ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGGTGCGCGTCTTGTCCGGCCTTCggg                                       >  1:1139043/1‑70 (MQ=38)
                 ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTc                                                  >  1:84772/1‑59 (MQ=255)
                 ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACggg                                       >  1:1109997/1‑70 (MQ=255)
                 ttGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACggg                                       >  1:1136877/1‑70 (MQ=255)
                  tgatgaGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCTTGTCCGGCCTACgggg                                      <  1:940752/70‑1 (MQ=255)
                              gCAGTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGAt                         <  1:161896/71‑1 (MQ=255)
                                 gTAGCGCCGCTCCTATGCCGGAGGCGATGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAg                      <  1:1041898/71‑1 (MQ=255)
                                                     gAGGCGATGCTGCGCGTCTTGTCCGGCCTACGGGGAGCCAGGTCGGATAAGGCGTTTACGCCGCATCCGAc  <  1:935050/71‑1 (MQ=255)
                                                       ggCGATGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGtt                 <  1:1104934/54‑1 (MQ=255)
                                                            |                                                               
GATCATCAGCCAGTGTTTTGATGAGGCGAAGCAGTAGCGCCGCTCCTATGCCGGAGGCGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGAC  >  W3110S.gb/2792635‑2792758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: