Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,001,511 T→C 54.8% I81T (ATA→ACA)  xdhB → xanthine dehydrogenase, FAD‑binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,001,5110TC54.8% 8.0 / 38.5 31I81T (ATA→ACA) xdhBxanthine dehydrogenase, FAD‑binding subunit
Reads supporting (aligned to +/- strand):  ref base T (6/8);  new base C (14/3);  total (20/11)
Fisher's exact test for biased strand distribution p-value = 3.09e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTGCTGGA  >  W3110S.gb/3001446‑3001575
                                                                 |                                                                
gggAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATag                                                                >  1:279177/1‑68 (MQ=255)
gggAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACag                                                                >  1:1206779/1‑68 (MQ=255)
gggAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACag                                                                >  1:1646986/1‑68 (MQ=255)
  gAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACag                                                                >  1:906049/1‑66 (MQ=255)
    aTTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATcc                                                         >  1:1207993/1‑71 (MQ=255)
      tACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATagaa                                                              <  1:14478/64‑1 (MQ=255)
                gAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACg                                             >  1:443289/1‑71 (MQ=255)
                gAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACACAGCTAACAGAAGATCCTATAACTc                                                 >  1:86486/1‑67 (MQ=255)
                  aGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCTATAACTCACCGTc                                           <  1:656822/71‑1 (MQ=255)
                  aGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCTATAACTCAACGt                                            >  1:1300656/1‑70 (MQ=255)
                      ggCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCta                                                       >  1:1304513/1‑55 (MQ=255)
                       gCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTCAtctc                                      >  1:894995/1‑71 (MQ=255)
                        cTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCaa                                               >  1:719005/1‑61 (MQ=255)
                        cTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTc                                           <  1:1007169/65‑1 (MQ=255)
                        cTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTCATCTcc                                     >  1:1719970/1‑71 (MQ=255)
                        cTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTCATCTcc                                     <  1:694433/71‑1 (MQ=255)
                          cGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTCATCTCCCg                                   >  1:824835/1‑71 (MQ=255)
                            cTACGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTCATCTCCCGGc                                 >  1:1354927/1‑71 (MQ=255)
                               cGTATCGGCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCTATAACTCAACGTCATCTCCCGGCGt                               <  1:1042954/70‑1 (MQ=255)
                                   tCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGAt                                                           <  1:474218/38‑1 (MQ=255)
                                   tCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGAt                                                           <  1:755697/38‑1 (MQ=255)
                                     ggCTCTGCAACGACATTTACCCAGCTAACAGAAGATCCta                                                       >  1:959861/1‑40 (MQ=255)
                                            cAACGACATTTACCCAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGcc                 <  1:1066178/71‑1 (MQ=255)
                                                   aTTTACCCAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCa          <  1:1746668/71‑1 (MQ=255)
                                                   aTTTACCCAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCa          <  1:1461790/71‑1 (MQ=255)
                                                    tttACCCAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCAt         >  1:385896/1‑71 (MQ=255)
                                                      tACCCAGCTAACAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTg       >  1:713198/1‑71 (MQ=255)
                                                        cccAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTGc      <  1:1443917/70‑1 (MQ=255)
                                                           aGCTAATAGAAGATCCTATAACTCGACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTGCTGGa  >  1:1623097/1‑71 (MQ=255)
                                                            gCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTg       >  1:466002/1‑65 (MQ=255)
                                                            gCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTg       >  1:307489/1‑65 (MQ=255)
                                                                 |                                                                
GGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCTATAACTCAACGTCATCTCCCGGCGTTATGTGCTGCGGCCACGTCCATTGCTGGA  >  W3110S.gb/3001446‑3001575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: