New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 274373NA (NA)57 (1.070) 27/98 NT 100% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter
?W3110S.gb 576000 = 0 (0.000)pseudogene (109/1128 nt) nmpC DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin

Only 100 of 133 total aligned reads displayed.

ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/274304‑274373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA  >  W3110S.gb/576000‑576067
                                                                                                                                          
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:256605/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:4918752/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:4344479/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:3075859/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1705876/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:1320480/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:3471602/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:3783201/1‑71
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:540030/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2672021/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2683620/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2722280/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:1429091/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:473910/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1526385/1‑70
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:2170314/70‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:4118685/1‑71
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:364785/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:3002037/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:2811406/1‑71
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:4286389/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                   >  1:3061916/1‑70
   ATGAACCCTGTTCTATGGCTCCAAATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:5054650/1‑71
    TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT                                                                 <  1:428282/71‑1
    TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:1281020/1‑70
      AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     <  1:3305736/65‑1
       ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                              <  1:1085845/71‑1
          CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGAT                                                           >  1:125644/1‑71
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:4664009/1‑61
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:1446235/1‑58
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                                >  1:2270666/1‑61
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:789440/1‑59
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:4890911/1‑59
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:1625769/1‑59
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:4686278/1‑56
                 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                                >  1:3613901/1‑59
                 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    >  1:1965954/1‑55
                  TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA                                                            >  1:5136396/1‑62
                     CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  >  1:4957598/1‑53
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:1077999/52‑1
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:4424221/52‑1
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                  <  1:4634181/52‑1
                          GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:1454903/69‑1
                          GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:2192510/46‑1
                          GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:3805395/46‑1
                           ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:1094936/45‑1
                           ATGACAAACATGATCTCATATAAGGGACTTCTTCGCACCTTCCT                                                                     >  1:2534410/1‑44
                            TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:3325747/1‑43
                            TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:3657636/1‑43
                            TGACAAACATGATCTCATATCAGGGACTTGTTCGCACATTCCT                                                                     >  1:5007378/1‑43
                             GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA                                           >  1:1573404/1‑68
                             GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                   >  1:4825070/1‑44
                             GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                     >  1:2641864/1‑42
                              ACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCA                                               <  1:1215711/63‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:3051854/71‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:116072/71‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:31172/71‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:1607283/71‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:3103599/42‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                    <  1:4309513/42‑1
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA                                                            >  1:4383842/1‑48
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT                                   >  1:68979/1‑71
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                   >  1:2734071/1‑39
                                   CATGATCTCATATCAGTGACTTGTTCGCACCTTCCTTAG                                                                  <  1:433554/39‑1
                                   CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                   >  1:2733303/1‑38
                                     TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT                                 >  1:4689498/1‑70
                                       ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA                               <  1:463674/70‑1
                                          TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA                                                    >  1:188604/1‑46
                                          TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA                                                    >  1:1168618/1‑46
                                           CATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT                          >  1:4850358/1‑71
                                            ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGAAGAAATTCCCACTGTTAATATTa                         >  1:5002067/1‑70
                                             TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                       <  1:2083011/56‑1
                                              ATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA                                     >  1:735476/1‑57
                                              ATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC                                                      <  1:4131186/40‑1
                                               TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA                      <  1:4911608/71‑1
                                               TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCA                                                        >  1:3448128/1‑37
                                                 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATC                    >  1:3647875/1‑71
                                                 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATC                    >  1:2098848/1‑71
                                                 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAT                     <  1:3353500/70‑1
                                                   GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT                  <  1:4040661/71‑1
                                                    GACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT                  <  1:1983694/70‑1
                                                     ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT                  >  1:2068186/1‑69
                                                     ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGACACTGTTAATTTTTTCATCG                   >  1:2184533/1‑68
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA                               <  1:3604839/54‑1
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                             <  1:3601305/40‑1
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCA                                               <  1:3739693/38‑1
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC            >  1:3182560/1‑71
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC            >  1:429326/1‑71
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC            >  1:4003192/1‑71
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT                                   >  1:4009323/1‑48
                                                          TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCaa                                     <  1:4635604/45‑3
                                                          TTCGCACCGTCCTTAGTACTGATGCAGCTACAGCAGAAAT                                          <  1:5091474/40‑1
                                                             GCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTT        <  1:3506804/71‑1
                                                                 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG    <  1:4472024/71‑1
                                                                 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTT     >  1:412533/1‑70
                                                                 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAT                     <  1:294328/54‑1
                                                                 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC                       <  1:4718982/52‑1
                                                                 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC                       <  1:1107386/52‑1
                                                                   TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA  >  1:1715205/1‑71
                                                                    CCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA                                     >  1:4724227/1‑35
                                                                                                                                          
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/274304‑274373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA  >  W3110S.gb/576000‑576067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.