| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 47 (0.920) | 27/94 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172377‑2172309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932930‑3933000 GTCATGTGAGTCACCTCTGTCTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:510428/70‑1GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:2840098/70‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCC < 1:816405/70‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCC < 1:2968618/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA > 1:3577749/1‑58 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCG > 1:4773817/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGC > 1:4090726/1‑71 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:4042411/71‑1 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:1476544/71‑1 GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA > 1:2649719/1‑69 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGAGATCCCGGGCCTCGCTGAAAAGTG < 1:3502368/71‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA > 1:1907810/1‑41 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATAAGTGATCCCGGGCCTCGC > 1:3552108/1‑58 CACTTATCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGT > 1:5678/1‑69 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:1704254/69‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCC < 1:3461952/44‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGC > 1:2137843/1‑70 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGG > 1:3559623/1‑60 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:2966350/69‑1 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:1529576/69‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTTGGAAGTCAGCGAA < 1:2557543/70‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:1031625/70‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:3884263/70‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:2074685/70‑1 GCCGCGTCTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:4826244/70‑1 GCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACG > 1:601405/1‑71 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:4015352/71‑1 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:4100590/71‑1 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:4851130/71‑1 CACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC < 1:627596/71‑1 CACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA > 1:4073758/1‑70 CACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:5024759/70‑1 CACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:4488472/70‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:4952388/67‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:4176761/1‑71 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGT < 1:1774118/43‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGT < 1:2645755/43‑1 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2169700/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:2559883/1‑45 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:1769234/1‑45 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:5070124/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTAT < 1:3983527/70‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTAT < 1:3633614/70‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCT < 1:725928/68‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:2755730/55‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGA > 1:4941654/1‑45 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGA > 1:4984804/1‑45 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGA > 1:857301/1‑45 GGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTC < 1:1086708/70‑1 TAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:2915131/1‑71 AAGATCAGTGATCCCGGGCCTCGCTGATAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:3800754/1‑70 GATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1497949/1‑58 ATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGC > 1:1104365/1‑71 ATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:2563169/1‑67 TCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:4744821/1‑71 TCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:4318346/1‑71 TCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:409888/1‑71 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:3975701/1‑70 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2512363/1‑55 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2250829/1‑55 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1769743/1‑55 AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA < 1:3088598/71‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172377‑2172309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932930‑3933000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |