| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744266 | 3744273 | 8–1336 | 107 [0] | [0] 106 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 77 (1.730) | 36/82 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
Only 100 of 120 total aligned reads displayed.
TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742862‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG > W3110S.gb/3744274‑3744343 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:3982200/71‑1TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:3040158/70‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:3981274/71‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA < 1:4566620/70‑1 AGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:1994865/1‑71 ACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:4235893/1‑71 AAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC > 1:2161582/1‑69 AAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC > 1:1380602/1‑69 AAGCGGCTAAAAGTTTGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG < 1:1964412/69‑1 AAGCGGATAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCG > 1:655604/1‑71 AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT > 1:4645939/1‑61 AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT > 1:27678/1‑61 CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:4409805/71‑1 CTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:4463845/60‑1 CTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:2564408/60‑1 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:2040564/1‑71 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:849191/1‑71 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1797693/51‑1 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:3240339/51‑1 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1311379/51‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:4752204/70‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:580604/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:165328/70‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:4353841/57‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:3831758/57‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:1553376/57‑1 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:152265/1‑68 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC > 1:2003079/1‑57 TCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG > 1:3150932/1‑71 TCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG > 1:176635/1‑71 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG > 1:687772/1‑49 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCCTTTCATACGATTCGGT < 1:2043391/71‑1 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:1645330/44‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG < 1:5098480/52‑1 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:3566231/1‑71 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:670571/1‑71 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:2329404/1‑71 GACAAGCTTATTACAACTTTTTCACATTTTATTGTGAAATT < 1:4759798/41‑1 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGAT < 1:4333298/59‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:1877469/1‑50 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:867843/1‑50 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:4071977/1‑50 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:252884/46‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:4297002/46‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACG > 1:5021718/1‑71 TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:155351/1‑59 TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:233808/1‑59 TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:2278669/1‑48 TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:1087726/1‑48 ATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG < 1:2298208/55‑1 ATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG < 1:2074820/55‑1 TTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC < 1:934637/52‑1 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA < 1:653095/48‑1 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA < 1:3748236/70‑1 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA < 1:4211884/70‑1 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:2128311/1‑63 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:4417629/1‑63 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC < 1:1502106/49‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAG > 1:1125761/1‑71 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:1097060/43‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:3742797/48‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:3421997/48‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:3046125/37‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:3273593/37‑1 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:3266327/1‑49 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT < 1:4184007/69‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:4581184/1‑57 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:4474084/1‑48 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG < 1:2545430/45‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:3831841/1‑37 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:5099286/1‑37 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:4802006/1‑37 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT < 1:1049940/70‑1 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT < 1:854762/70‑1 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT < 1:2889030/70‑1 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT < 1:4563527/70‑1 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA < 1:3392856/70‑1 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA < 1:3294274/70‑1 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA < 1:4872426/70‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:1687346/1‑43 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA < 1:5134924/56‑1 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGT > 1:3629864/1‑53 TATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGACATCGACGCGTAAAGGTTTTTAATGGTTTC > 1:3458745/1‑71 ATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTC < 1:4229230/70‑1 GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG > 1:2528012/1‑70 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTA < 1:1724164/71‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:2202587/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:468784/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT < 1:4051111/64‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGC < 1:4216978/36‑1 GAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA < 1:4853006/58‑1 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA < 1:4316759/48‑1 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA < 1:3468466/48‑1 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA < 1:4467809/48‑1 AATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACC < 1:3235680/71‑1 AATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC < 1:4070234/70‑1 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:2567748/1‑69 TTGGGTCGCGTTTCATACGAGTCGGTTATGCCAGCGCCGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:4296259/1‑68 GGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA > 1:5099142/1‑43 GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG < 1:888419/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742862‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG > W3110S.gb/3744274‑3744343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |