Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 3,742,938 Δ1,336 bp 100% insDinsC insD, insC

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 3742938–3744266 3744273 8–1336 107 [0] [0] 106 insD–insC insD,insC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 37429370 (0.000)77 (1.730) 36/82 NT 100% intergenic (‑123/+9) yieE/insD predicted phosphopantetheinyl transferase/IS2 element protein
?W3110S.gb 3744274 = 0 (0.000)intergenic (‑100/+21) insC/yidZ IS2 element protein/predicted DNA‑binding transcriptional regulator

Only 100 of 120 total aligned reads displayed.

TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3742862‑3742937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG  >  W3110S.gb/3744274‑3744343
                                                                                                                                                  
TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA                                                                             <  1:3982200/71‑1
TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA                                                                              <  1:3040158/70‑1
  GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT                                                                           <  1:3981274/71‑1
  GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA                                                                            <  1:4566620/70‑1
     AGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG                                                                        >  1:1994865/1‑71
       ACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT                                                                      >  1:4235893/1‑71
          AAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC                                                                     >  1:2161582/1‑69
          AAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC                                                                     >  1:1380602/1‑69
           AAGCGGCTAAAAGTTTGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG                                                                    <  1:1964412/69‑1
           AAGCGGATAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCG                                                                  >  1:655604/1‑71
            AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT                                                                           >  1:4645939/1‑61
            AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT                                                                           >  1:27678/1‑61
              CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT                                                               <  1:4409805/71‑1
                 CTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG                                                                       <  1:4463845/60‑1
                 CTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG                                                                       <  1:2564408/60‑1
                   AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          >  1:2040564/1‑71
                   AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          >  1:849191/1‑71
                   AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA                                                                              <  1:1797693/51‑1
                   AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA                                                                              <  1:3240339/51‑1
                   AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA                                                                              <  1:1311379/51‑1
                    AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          <  1:4752204/70‑1
                    AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          >  1:580604/1‑70
                    AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          <  1:165328/70‑1
                    AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG                                                                       <  1:4353841/57‑1
                    AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG                                                                       <  1:3831758/57‑1
                    AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG                                                                       <  1:1553376/57‑1
                      AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          >  1:152265/1‑68
                      AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC                                                                     >  1:2003079/1‑57
                         TCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG                                                    >  1:3150932/1‑71
                         TCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG                                                    >  1:176635/1‑71
                          CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG                                                                         >  1:687772/1‑49
                           GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCCTTTCATACGATTCGGT                                                  <  1:2043391/71‑1
                           GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA                                                                             <  1:1645330/44‑1
                            ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG                                                                    <  1:5098480/52‑1
                              TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT                                               >  1:3566231/1‑71
                              TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT                                               >  1:670571/1‑71
                              TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT                                               >  1:2329404/1‑71
                                 GACAAGCTTATTACAACTTTTTCACATTTTATTGTGAAATT                                                                          <  1:4759798/41‑1
                                  ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGAT                                                       <  1:4333298/59‑1
                                    AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC                                                              >  1:1877469/1‑50
                                    AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC                                                              >  1:867843/1‑50
                                    AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC                                                              >  1:4071977/1‑50
                                       CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT                                                               <  1:252884/46‑1
                                       CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT                                                               <  1:4297002/46‑1
                                        TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACG                                     >  1:5021718/1‑71
                                         TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:155351/1‑59
                                         TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:233808/1‑59
                                         TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           >  1:2278669/1‑48
                                         TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           >  1:1087726/1‑48
                                          ATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   <  1:2298208/55‑1
                                          ATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   <  1:2074820/55‑1
                                           TTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC                                                     <  1:934637/52‑1
                                            TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA                                                        <  1:653095/48‑1
                                             ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA                                 <  1:3748236/70‑1
                                              CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA                                <  1:4211884/70‑1
                                              CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA                                       >  1:2128311/1‑63
                                              CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA                                       >  1:4417629/1‑63
                                              CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC                                                     <  1:1502106/49‑1
                                               AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAG                              >  1:1125761/1‑71
                                               AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          <  1:1097060/43‑1
                                                  TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT                                                  <  1:3742797/48‑1
                                                  TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT                                                  <  1:3421997/48‑1
                                                  TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             <  1:3046125/37‑1
                                                  TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             <  1:3273593/37‑1
                                                   TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:3266327/1‑49
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT                           <  1:4184007/69‑1
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA                                       >  1:4581184/1‑57
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:4474084/1‑48
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   <  1:2545430/45‑1
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           >  1:3831841/1‑37
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           >  1:5099286/1‑37
                                                    TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           >  1:4802006/1‑37
                                                      TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT                        <  1:1049940/70‑1
                                                      TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT                        <  1:854762/70‑1
                                                      TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT                        <  1:2889030/70‑1
                                                      TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT                        <  1:4563527/70‑1
                                                       TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA                       <  1:3392856/70‑1
                                                       TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA                       <  1:3294274/70‑1
                                                        ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA                      <  1:4872426/70‑1
                                                         CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:1687346/1‑43
                                                            TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA                                <  1:5134924/56‑1
                                                             TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGT                                  >  1:3629864/1‑53
                                                              TATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGACATCGACGCGTAAAGGTTTTTAATGGTTTC               >  1:3458745/1‑71
                                                               ATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTC               <  1:4229230/70‑1
                                                                  GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG            >  1:2528012/1‑70
                                                                   TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTA          <  1:1724164/71‑1
                                                                   TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT           <  1:2202587/70‑1
                                                                   TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT           <  1:468784/70‑1
                                                                   TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT                 <  1:4051111/64‑1
                                                                   TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGC                                             <  1:4216978/36‑1
                                                                    GAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA                      <  1:4853006/58‑1
                                                                     AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA                               <  1:4316759/48‑1
                                                                     AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA                               <  1:3468466/48‑1
                                                                     AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA                               <  1:4467809/48‑1
                                                                      AATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACC       <  1:3235680/71‑1
                                                                      AATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC        <  1:4070234/70‑1
                                                                       ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC        >  1:2567748/1‑69
                                                                        TTGGGTCGCGTTTCATACGAGTCGGTTATGCCAGCGCCGCGTAAAGGTTTTTAATGGTTTCCCGTAAC        >  1:4296259/1‑68
                                                                          GGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA                               >  1:5099142/1‑43
                                                                           GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG  <  1:888419/71‑1
                                                                                                                                                  
TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3742862‑3742937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG  >  W3110S.gb/3744274‑3744343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.