| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4177036 = | 84 (1.580) | 4 (0.090) | 3/86 | NT | 4.9% | coding (459/984 nt) | gspK | general secretory pathway component, cryptic |
| ? | W3110S.gb | 4177058 = | 80 (1.710) | coding (437/984 nt) | gspK | general secretory pathway component, cryptic | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4177109‑4177036‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgatTGCACGATCTCATCGGTGTTTCCGCGATCGATACCGGCGTTAATCAGCAGCGCACTGAATACCTGGG > W3110S.gb/4177058‑4177124 CGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATT < 1:3443296/71‑1 GCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTG < 1:1672669/71‑1 GCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTG < 1:4651484/71‑1 GCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTG < 1:4060193/71‑1 CTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTG < 1:332444/70‑1 GATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATAT > 1:4868335/1‑63 GATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATAT > 1:1872404/1‑63 TTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATA > 1:3200424/1‑60 TAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGA > 1:2573693/1‑63 TAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGA > 1:1693747/1‑63 AACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATA > 1:2511542/1‑58 GGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTG < 1:4255915/55‑1 CGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATT < 1:3551637/49‑1 ATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATT < 1:522902/47‑1 TGCAATCAATCGCTGACTATATTGATTGCACGATCTCATCGGTGTTTCCGCGATCGATACCGGC < 1:1907020/64‑1 AATCAATCGCTGACTATATTGATTGCACGATCTCATCGGTGT < 1:4763990/42‑1 TCAATCGCTGACTATATTGATTGCACGATCTCATCGGTGTTT > 1:1744201/1‑42 TCAATCGCTGACTATATTGATTGCACGATCTCATCGGTGTTT > 1:4835821/1‑42 ATTGATTGCACGATCTCATCGGTGTTTCCGCGATC < 1:2712617/35‑1 ATTGATTGCACGATCTCATCGGTGTTTCCGCGATC < 1:1472176/35‑1 TTGATTGCACGATCTCATCGGTGTTTCCGCGATCGATACCGGCGTTAATCAGCAGCGCACTGAAT < 1:3344426/65‑1 TTGATTGCACGATCTCATCGGTGTTTCCGCGATCGATACCGGCGTTAATCAGCAGCGCACTG < 1:4354516/62‑1 TGATTGCACGATCTCATCGGTGTTTCCGCGATCGATACCGGCGTTAATCAGCAGCGCACTGAATACCTGGG > 1:672009/1‑71 TGATTGCACGATCTCATCGGTGTTTCCGCGATCGA > 1:3590676/1‑35 CGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4177109‑4177036‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgatTGCACGATCTCATCGGTGTTTCCGCGATCGATACCGGCGTTAATCAGCAGCGCACTGAATACCTGGG > W3110S.gb/4177058‑4177124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |