| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 74 (1.390) | 20 (0.530) +AGGGTCCCTAAGTC |
11/70 | NT | 37.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 18 (0.340) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
CGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTC > W3110S.gb/3464816‑3464938 | tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2682654‑M2/8‑1 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:496237‑M2/9‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:4971167‑M2/8‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1372531‑M2/8‑1 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:4539503‑M2/52‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:3445118‑M2/52‑71 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2676236‑M2/8‑1 (MQ=255) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1280852/71‑1 (MQ=32) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:1601778‑M2/23‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt > 1:3647693‑M2/48‑69 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:3185182‑M2/48‑70 (MQ=255) gATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAAGCCCAGTCTTTc < 1:1284057/65‑1 (MQ=18) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:68378/71‑1 (MQ=34) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:4313025‑M2/40‑71 (MQ=255) tCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:2480873/59‑1 (MQ=33) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg < 1:3979508‑M2/37‑1 (MQ=255) ccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:4406434‑M2/8‑1 (MQ=255) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:2882592/71‑1 (MQ=34) cAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa > 1:1186277/1‑71 (MQ=34) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:3255413‑M2/24‑1 (MQ=255) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTAGACTGAGCCTTTCGTTTTAt < 1:4329389/71‑1 (MQ=21) gagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa > 1:1049747/1‑71 (MQ=34) ttgtcataaagggtccctaagtcTAAAACGAAAGGccc > 1:270474‑M2/24‑38 (MQ=255) agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAt > 1:5030693/1‑71 (MQ=34) agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAt > 1:4465766/1‑71 (MQ=34) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:2029664‑M2/23‑41 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:4004860‑M2/23‑48 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:4232849‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:562057‑M2/23‑69 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt < 1:2292315‑M2/27‑1 (MQ=255) ttCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt < 1:1426547/54‑1 (MQ=35) cataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:3666381‑M2/21‑1 (MQ=255) tCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTg > 1:143206/1‑71 (MQ=34) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa > 1:3812792/1‑46 (MQ=38) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt > 1:1455535/1‑56 (MQ=35) ccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1887309/38‑1 (MQ=37) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTAGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGt > 1:2464852/1‑70 (MQ=25) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTc > 1:3526216/1‑71 (MQ=34) acaacaGATAAAACGAAAGGCCGAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGc < 1:3452707/63‑1 (MQ=25) aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:1717228/50‑1 (MQ=38) aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGtt < 1:133698/60‑1 (MQ=35) | CGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTC > W3110S.gb/3464816‑3464938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |