| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,682,290 | C→T | 39.1% | C340C (TGC→TGT) | ydgI → | predicted arginine/ornithine antiporter transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,682,290 | 0 | C | T | 39.1% | 49.9 / 70.5 | 64 | C340C (TGC→TGT) | ydgI | predicted arginine/ornithine antiporter transporter |
| Reads supporting (aligned to +/- strand): ref base C (10/29); new base T (13/12); total (23/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.77e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CCCGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCA > W3110S.gb/1682221‑1682351 | cccGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGc > 1:1770022/1‑70 (MQ=255)cccGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGc < 1:1826461/70‑1 (MQ=255) cgcATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGCTGACCAACATCTGCGTGCa < 1:3967785/71‑1 (MQ=255) cATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCaaa < 1:3112478/71‑1 (MQ=255) cATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCaaa < 1:1779269/71‑1 (MQ=255) aTTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAt > 1:1234584/1‑71 (MQ=255) tttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAttt < 1:2489212/70‑1 (MQ=255) ttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGt > 1:4935404/1‑71 (MQ=255) gcgcCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTgg < 1:390436/71‑1 (MQ=255) cAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACt < 1:3005071/71‑1 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTc < 1:3269414/71‑1 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTc < 1:632208/71‑1 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACt > 1:107176/1‑70 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTc < 1:378432/71‑1 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTc < 1:2102809/71‑1 (MQ=255) gAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCa < 1:808460/71‑1 (MQ=255) gAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCa < 1:245665/71‑1 (MQ=255) aCGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATc > 1:1571903/1‑71 (MQ=255) gCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTg > 1:1787276/1‑56 (MQ=255) aGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTa > 1:5139470/1‑58 (MQ=255) aGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGTTACTCATCTGGCTGa > 1:2865900/1‑71 (MQ=255) gCTGCGCCATCCGCCTCACTGTGGTTGACCATCATCTGCGTGCAAAttt < 1:1417594/49‑1 (MQ=255) gCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAAt > 1:4408315/1‑47 (MQ=255) cTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAt < 1:2649791/46‑1 (MQ=255) cTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAt < 1:1995674/46‑1 (MQ=255) cTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTgg < 1:2863731/65‑1 (MQ=255) cTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTgg < 1:1676891/65‑1 (MQ=255) tGCGCCATCCGCCTCACTTTGGTTGACCAACATCTGCGTGCAAAt < 1:1442060/45‑1 (MQ=255) ccATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTg < 1:2289494/63‑1 (MQ=255) cATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTcc < 1:4984616/71‑1 (MQ=255) tctgCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCg < 1:4775874/67‑1 (MQ=255) tCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCt < 1:4233033/44‑1 (MQ=255) tCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGa < 1:2925506/71‑1 (MQ=255) tCCGCCTCACTGTGGTTGACCAACATCTGCGTGCaaa < 1:4746557/37‑1 (MQ=255) tCCGCCTCACTGTGGTTGACCAACATCTGCGTGCaaa < 1:5039883/37‑1 (MQ=255) ccGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTgg < 1:2493092/45‑1 (MQ=255) cGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTgg > 1:4940538/1‑44 (MQ=255) cGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTg > 1:507698/1‑43 (MQ=255) gCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTa < 1:1910133/71‑1 (MQ=255) ccTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCg < 1:3016053/66‑1 (MQ=255) ccTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCg < 1:395829/66‑1 (MQ=255) tCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTc < 1:2747144/45‑1 (MQ=255) tCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTc < 1:4390400/45‑1 (MQ=255) cACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaa > 1:3829728/1‑70 (MQ=255) aCTGTGGTTGACCAACATCTGTTTGCAAATTTGTCTGGTACTCAt > 1:3711666/1‑45 (MQ=255) aCTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCAt > 1:3834971/1‑45 (MQ=255) aCTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCAt > 1:2250075/1‑45 (MQ=255) aCTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaaca < 1:2191484/71‑1 (MQ=255) aCTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaa < 1:5140902/69‑1 (MQ=255) aCTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaaca > 1:3987095/1‑71 (MQ=255) aCTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaaca > 1:5139882/1‑71 (MQ=255) cTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAacac < 1:2713655/71‑1 (MQ=255) gtgGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGt > 1:1360497/1‑71 (MQ=255) tgGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGtt > 1:1218056/1‑71 (MQ=255) tgGTTGACCAACATCTGCGTGCAAATTTGTCTGGt < 1:1839704/35‑1 (MQ=255) tgGTTGACCAACATCTGCGTGCAAATTTGTCTGGt > 1:838583/1‑35 (MQ=255) tgGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGtt > 1:2846486/1‑71 (MQ=255) tgGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGtt > 1:954995/1‑71 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTTGCTGACCGGTTCCGATTACAACACGTTGCTg < 1:338477/70‑1 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTg < 1:220940/70‑1 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGa > 1:3087007/1‑71 (MQ=255) aCCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGAc < 1:326512/71‑1 (MQ=255) aCCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGAc < 1:1734275/71‑1 (MQ=255) ccAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGa > 1:1921918/1‑42 (MQ=255) cAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCa < 1:515494/71‑1 (MQ=255) tCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGAcc < 1:3029184/38‑1 (MQ=255) | CCCGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCA > W3110S.gb/1682221‑1682351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |