Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,109 T→C 41.5% T241T (ACT→ACC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,1090TC41.5% 51.1 / 118.4 94T241T (ACT→ACCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (32/23);  new base C (18/21);  total (50/44)
Fisher's exact test for biased strand distribution p-value = 2.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTCGC  >  W3110S.gb/71041‑71173
                                                                    |                                                                
ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac                                                                <  1:4837019/71‑1 (MQ=255)
  aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                                              >  1:4212882/1‑71 (MQ=255)
   gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                                             <  1:1738753/71‑1 (MQ=255)
   gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                                             <  1:4277389/71‑1 (MQ=255)
    ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                                             <  1:596369/70‑1 (MQ=255)
        tAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                                              <  1:472372/65‑1 (MQ=255)
         aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                                                           >  1:3023216/1‑67 (MQ=255)
         aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                                       >  1:305513/1‑71 (MQ=255)
         aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTATCCGGa                                                           >  1:1577270/1‑67 (MQ=255)
         aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGa                                                           >  1:2604480/1‑67 (MQ=255)
         aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGa                                                           >  1:2379072/1‑67 (MQ=255)
         aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGa                                                           >  1:1819500/1‑67 (MQ=255)
          gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                                      <  1:4987214/71‑1 (MQ=255)
           cGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTa                                                     <  1:3510240/71‑1 (MQ=255)
            gTCTTAAGCTGGCTCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                                    <  1:4933994/71‑1 (MQ=255)
             tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                                                   <  1:967927/71‑1 (MQ=255)
              cTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                                      <  1:958934/67‑1 (MQ=255)
               ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                                    >  1:1832616/1‑68 (MQ=255)
                tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                                                 >  1:2369203/1‑70 (MQ=255)
                tAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc                                                 >  1:1920878/1‑70 (MQ=255)
                 aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                                               >  1:3241447/1‑71 (MQ=255)
                 aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                                               >  1:3925844/1‑71 (MQ=255)
                 aaGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCg                                                  <  1:3617210/68‑1 (MQ=255)
                       gcgtGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAcc                                             <  1:222678/67‑1 (MQ=255)
                       gcgcGAGGACCAATGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcg                                         <  1:343114/71‑1 (MQ=255)
                       gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                                                   >  1:3996384/1‑61 (MQ=255)
                       gcgcGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcg                                         <  1:4073125/71‑1 (MQ=255)
                       gcgcGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcg                                         <  1:2215933/71‑1 (MQ=255)
                         gcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggt                                       >  1:1363865/1‑71 (MQ=255)
                           gAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                                       <  1:1539480/53‑1 (MQ=255)
                           gAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                                       <  1:1328550/53‑1 (MQ=255)
                           gAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCt                                                      <  1:1921816/54‑1 (MQ=255)
                           gAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCt                                                      <  1:67561/54‑1 (MQ=255)
                            aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:3580318/71‑1 (MQ=255)
                            aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:446888/71‑1 (MQ=255)
                            aGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCt                                                      <  1:4841852/53‑1 (MQ=255)
                            aGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:4329749/71‑1 (MQ=255)
                             ggACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                                       <  1:2141864/51‑1 (MQ=255)
                             ggACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                                      >  1:2868231/1‑52 (MQ=255)
                                 cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                                             <  1:935022/41‑1 (MQ=25)
                                 cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               <  1:4910143/71‑1 (MQ=255)
                                 cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCa                                               >  1:1392743/1‑55 (MQ=255)
                                   aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTAt                                                    <  1:1368652/48‑1 (MQ=255)
                                   aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                <  1:1916929/68‑1 (MQ=255)
                                   aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg                             >  1:2998506/1‑71 (MQ=255)
                                    cGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTgg                            >  1:969715/1‑71 (MQ=255)
                                    cGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTgg                            >  1:2679000/1‑71 (MQ=255)
                                     gCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                                              >  1:2544643/1‑36 (MQ=255)
                                     gCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCttcggt                                       >  1:2299086/1‑59 (MQ=255)
                                     gCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcggt                                       >  1:1142108/1‑59 (MQ=255)
                                     gCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcgg                                        >  1:1005836/1‑58 (MQ=255)
                                        ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt                        <  1:4203013/71‑1 (MQ=255)
                                        ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt                        >  1:2530194/1‑71 (MQ=255)
                                          agccAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg                       <  1:4186194/67‑1 (MQ=255)
                                          agccAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa                      >  1:1297304/4‑71 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCa                                               >  1:1352789/1‑46 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               >  1:4520014/1‑62 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               >  1:1407651/1‑62 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               >  1:827316/1‑62 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               >  1:5023670/1‑62 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg                       <  1:1746314/70‑1 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg                       >  1:118504/1‑70 (MQ=255)
                                          aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg                       <  1:4779941/70‑1 (MQ=255)
                                           gTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGAc                     <  1:1775145/71‑1 (MQ=255)
                                              aGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGa                   >  1:1605061/1‑70 (MQ=255)
                                              aGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGAt                  >  1:3391091/1‑71 (MQ=255)
                                               ggCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATc                 <  1:2381154/71‑1 (MQ=255)
                                               ggCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGAt                  >  1:2474551/1‑70 (MQ=255)
                                                gCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGTTTTTGACGAt                  <  1:1197239/69‑1 (MQ=255)
                                                 cGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCaa               >  1:1258156/1‑71 (MQ=255)
                                                 cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt                        <  1:4774112/62‑1 (MQ=255)
                                                  gAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCa                >  1:3710280/1‑69 (MQ=255)
                                                  gAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCa                >  1:53482/1‑69 (MQ=255)
                                                   aaGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                                                >  1:2499443/1‑36 (MQ=255)
                                                   aaGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                                                >  1:793624/1‑36 (MQ=255)
                                                     gctgctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAActct           <  1:2327832/71‑1 (MQ=255)
                                                     gctgctTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGa                   <  1:4280830/63‑1 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCgt                                           >  1:2566739/1‑36 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCaa                                  >  1:1247096/1‑45 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCaa                                  >  1:4845355/1‑45 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCaa                                  >  1:3225831/1‑45 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCaa                                  >  1:3358114/1‑45 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCaa               >  1:2921302/1‑64 (MQ=255)
                                                        gctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTAtt        >  1:1095721/1‑71 (MQ=255)
                                                         ctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa                      >  1:3702912/1‑56 (MQ=255)
                                                         ctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTAttt       <  1:2078295/71‑1 (MQ=255)
                                                         ctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTAt         <  1:2309362/69‑1 (MQ=255)
                                                         ctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGACGCa                                   >  1:694376/1‑43 (MQ=255)
                                                         ctTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTAttt       <  1:1193951/71‑1 (MQ=255)
                                                            ttGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTtct     <  1:5012855/70‑1 (MQ=255)
                                                            ttGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTtct     <  1:4006809/70‑1 (MQ=255)
                                                            ttGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTtct     <  1:3364766/70‑1 (MQ=255)
                                                              gAGCACCACCCGGATGCCTCTCGCCACCgtcggtcg                                     >  1:3151157/1‑36 (MQ=38)
                                                              gAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTcgc  >  1:495496/1‑71 (MQ=255)
                                                                   cTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt                        <  1:1576142/44‑1 (MQ=255)
                                                                    |                                                                
TTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTCGC  >  W3110S.gb/71041‑71173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: