| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,998,999 | G→A | 40.8% | intergenic (‑452/‑2) | ygeR ← / → xdhA | Tetratricopeptide repeat transcriptional regulator/xanthine dehydrogenase, molybdenum binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,998,999 | 0 | G | A | 40.8% | 30.7 / 56.4 | 49 | intergenic (‑452/‑2) | ygeR/xdhA | Tetratricopeptide repeat transcriptional regulator/xanthine dehydrogenase, molybdenum binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (14/15); new base A (10/10); total (24/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.83e-01 | |||||||||||
TAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGG > W3110S.gb/2998929‑2999064 | tAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcatg < 1:3093346/71‑1 (MQ=255)tAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcatg < 1:719792/71‑1 (MQ=255)tAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcatg > 1:1855985/1‑71 (MQ=255) aGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcatgca > 1:4625215/1‑71 (MQ=255) aGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcataca > 1:4651741/1‑71 (MQ=255) aGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcataca < 1:1604840/71‑1 (MQ=255) aGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcataca > 1:4671063/1‑71 (MQ=255) gTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGa > 1:1893351/1‑71 (MQ=255) cAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCatacatgc > 1:573125/1‑61 (MQ=255) aaaTCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGcc < 1:1745845/71‑1 (MQ=255) aaaTCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGc > 1:406387/1‑70 (MQ=255) gAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGc < 1:2017203/71‑1 (MQ=255) ggggATTTCTATGGAAGCTCGGGAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCt < 1:1237549/70‑1 (MQ=255) ggggATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTa < 1:2286230/71‑1 (MQ=255) gATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAgg > 1:3397007/1‑71 (MQ=255) tttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGt > 1:3712353/1‑70 (MQ=255) tttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGt > 1:898961/1‑70 (MQ=255) ttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCa > 1:3449748/1‑71 (MQ=255) ttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCa > 1:495868/1‑71 (MQ=255) tCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcatgca < 1:4237325/43‑1 (MQ=255) tCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATcatgca > 1:803298/1‑43 (MQ=255) tCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCa < 1:3346808/70‑1 (MQ=255) tCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCAc > 1:4377049/1‑71 (MQ=255) tATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGcc < 1:2594366/55‑1 (MQ=255) gAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACcgggcg > 1:4459088/1‑71 (MQ=255) gcgGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCAc > 1:4206242/1‑71 (MQ=255) gggAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGa < 1:382570/71‑1 (MQ=255) gggAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCAc < 1:4945336/69‑1 (MQ=255) gggAAGCAACCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGa < 1:4986434/71‑1 (MQ=255) ggAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGa < 1:193680/70‑1 (MQ=255) gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTa > 1:3645182/1‑49 (MQ=255) gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGata > 1:5147170/1‑71 (MQ=255) gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGata > 1:5141564/1‑71 (MQ=255) gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGata < 1:4863775/71‑1 (MQ=255) gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGata < 1:3028389/71‑1 (MQ=255) gCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATAc < 1:1167539/71‑1 (MQ=255) cAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACt < 1:4136677/71‑1 (MQ=255) cAACCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGa < 1:3359269/65‑1 (MQ=255) aaCCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACt < 1:4328446/70‑1 (MQ=255) aCCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTgc > 1:1091247/1‑70 (MQ=255) aCCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTa < 1:2848252/43‑1 (MQ=255) aCCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTa < 1:2891196/43‑1 (MQ=255) aCCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCAcc > 1:711603/1‑51 (MQ=255) aCCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCAcc > 1:2599175/1‑51 (MQ=255) aCCGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCAcc > 1:2936428/1‑51 (MQ=255) cGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGAc > 1:1484834/1‑70 (MQ=255) cGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGAc > 1:488361/1‑70 (MQ=255) cGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACg < 1:845968/71‑1 (MQ=255) cGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACg < 1:4939961/71‑1 (MQ=255) cGCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTaa > 1:4574599/1‑42 (MQ=255) gCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGa < 1:1113700/71‑1 (MQ=255) gCTACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGAtata > 1:4180126/1‑64 (MQ=255) tACGGGTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGAt > 1:4112705/1‑70 (MQ=255) ggTGAATCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGAttatgt < 1:3441145/71‑1 (MQ=255) gTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGAttatgtt < 1:2038183/71‑1 (MQ=255) tGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGata < 1:3064022/54‑1 (MQ=255) gAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGata > 1:1948791/1‑53 (MQ=255) aTCATACATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATgg > 1:4697441/1‑71 (MQ=255) tCATACATGCGCGTCGATGTCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGAttatgttat < 1:3695355/68‑1 (MQ=255) catgcatgCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGAttatgttat < 1:2917334/67‑1 (MQ=255) | TAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGG > W3110S.gb/2998929‑2999064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |