| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 3,162,310 | G→A | 32.3% | intergenic (‑173/+61) | plsC ← / ← parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,162,310 | 0 | G | A | 32.3% | 43.0 / 26.1 | 34 | intergenic (‑173/+61) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A |
| Reads supporting (aligned to +/- strand): ref base G (14/9); new base A (6/5); total (20/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTC > W3110S.gb/3162244‑3162376 | aTGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACtt < 1:4802590/71‑1 (MQ=255)aTGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACtt < 1:2821317/71‑1 (MQ=255) tGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTa < 1:3118893/71‑1 (MQ=255) aaTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAAc > 1:4654607/1‑71 (MQ=255) aTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACg > 1:1977724/1‑71 (MQ=255) aacaacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGttt > 1:2452890/1‑71 (MQ=255) aacaacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGttt > 1:4654567/1‑71 (MQ=255) aacaacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACCttt > 1:4040473/1‑71 (MQ=255) caacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCa > 1:522126/1‑71 (MQ=255) aacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCAt > 1:1638191/1‑71 (MQ=255) ggTTTCAAGGGAATTTTTTTCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCATCCg > 1:548191/1‑71 (MQ=255) tttCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGttt < 1:3818021/63‑1 (MQ=255) tttCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGttt < 1:3008202/63‑1 (MQ=255) cAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGt < 1:4644952/70‑1 (MQ=255) gggAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCt > 1:410599/1‑71 (MQ=255) tttttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGc > 1:1418901/1‑69 (MQ=255) tttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCg > 1:3440330/1‑59 (MQ=255) tATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCg < 1:767727/70‑1 (MQ=255) gTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggag > 1:992252/1‑70 (MQ=255) tttCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga < 1:4289387/71‑1 (MQ=255) tttCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga < 1:1020914/71‑1 (MQ=255) gAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTc > 1:332506/1‑71 (MQ=255) gAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTc > 1:2718754/1‑71 (MQ=255) gAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTc > 1:2700241/1‑71 (MQ=255) aaTACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga < 1:135306/58‑1 (MQ=255) aaTACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTcc > 1:1352043/1‑71 (MQ=255) tACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTcccc < 1:2837045/71‑1 (MQ=255) cGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggag > 1:1093091/1‑52 (MQ=255) ccGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCatat < 1:4633275/71‑1 (MQ=255) ccGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCata < 1:4862103/70‑1 (MQ=255) gATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTAc < 1:4748832/71‑1 (MQ=255) aTGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTAc > 1:2051500/1‑70 (MQ=255) tGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGaa > 1:3657556/1‑45 (MQ=255) tGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTActc > 1:3013465/1‑71 (MQ=255) | ATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTC > W3110S.gb/3162244‑3162376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |