Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 548,801 G→A 44.8% pseudogene (1221/1259 nt)
pseudogene (964/1002 nt)
ylbE →
ylbE →
ECK0512:JW0508+JW0507:b4572; hypothetical protein
ECK0512:JW0508:b0519; hypothetical protein, C‑ter fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb548,8010GA44.8% 9.7 / 33.4 29pseudogene (1221/1259 nt)
pseudogene (964/1002 nt)
ylbE
ylbE
ECK0512:JW0508+JW0507:b4572; hypothetical protein
ECK0512:JW0508:b0519; hypothetical protein, C‑ter fragment
Reads supporting (aligned to +/- strand):  ref base G (4/12);  new base A (7/6);  total (11/18)
Fisher's exact test for biased strand distribution p-value = 1.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCATAAAGAGGCGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGC  >  W3110S.gb/548731‑548871
                                                                      |                                                                      
ccATAAAGAGGCGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAgg                                                                        <  1:876198/71‑1 (MQ=255)
  aTAAAGAGGCGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGgcg                                                                      <  1:3947568/71‑1 (MQ=255)
  aTAAAGAGGCGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg                                                                      <  1:3895529/71‑1 (MQ=255)
          gCGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAg                                                               >  1:1604894/1‑70 (MQ=255)
                   gggCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGa                                                     <  1:243385/71‑1 (MQ=255)
                    ggCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGaa                                                    <  1:1435538/71‑1 (MQ=255)
                      cAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGaaac                                                  <  1:915597/71‑2 (MQ=255)
                         aTTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTg                                                                   <  1:2566445/51‑1 (MQ=255)
                         aTTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAg                                                  <  1:1419765/68‑1 (MQ=255)
                         aTTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAg                                                  <  1:4260394/68‑1 (MQ=255)
                           tGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATgg                                             >  1:3208188/1‑71 (MQ=255)
                           tGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATgg                                             >  1:1697893/1‑71 (MQ=255)
                             gcgcAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATggg                                            <  1:3749766/70‑1 (MQ=255)
                                 aGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg                                       <  1:4748486/71‑1 (MQ=255)
                                     aCCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg                                   <  1:124881/71‑1 (MQ=255)
                                     aCCGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg                                   <  1:1621539/71‑1 (MQ=255)
                                         tGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCAc                                                            >  1:4805358/1‑42 (MQ=255)
                                           cGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTAtt                                        >  1:684346/1‑60 (MQ=255)
                                                  cGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCt                                                       <  1:4914411/38‑1 (MQ=255)
                                                   gCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAAt                      >  1:4158773/1‑70 (MQ=255)
                                                   gCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAAt                      >  1:5107409/1‑70 (MQ=255)
                                                   gCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATg                     <  1:3864354/71‑1 (MQ=255)
                                                       gCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACg                  <  1:2880611/70‑1 (MQ=255)
                                                       gCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAg                                                  <  1:5059147/38‑1 (MQ=255)
                                                        cGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACg                  <  1:3595738/69‑1 (MQ=255)
                                                         gTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGat                <  1:4798166/70‑1 (MQ=255)
                                                           gCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatcat             >  1:4156012/1‑71 (MQ=255)
                                                            cTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatcatc            >  1:245869/1‑71 (MQ=255)
                                                             tttGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg                                   <  1:2862277/47‑1 (MQ=255)
                                                               tGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATcatcca          <  1:4596927/70‑1 (MQ=255)
                                                                gAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa                       >  1:4409772/1‑56 (MQ=255)
                                                                gAACAGAAGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa                       >  1:2235269/1‑56 (MQ=255)
                                                                      gcgcTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGc  <  1:292141/71‑1 (MQ=255)
                                                                      gcgcTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGc  <  1:965851/71‑1 (MQ=255)
                                                                      |                                                                      
CCATAAAGAGGCGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGC  >  W3110S.gb/548731‑548871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: