| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 797,006 | G→A | 21.7% | G11S (GGC→AGC) | modC → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 797,006 | 0 | G | A | 21.7% | 94.6 / 22.1 | 46 | G11S (GGC→AGC) | modC | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (12/24); new base A (3/7); total (15/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.47e-01 | |||||||||||
GCTGGCCAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCC > W3110S.gb/796937‑797074 | gctggcCAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTgg < 1:207396/70‑1 (MQ=255) gcCAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTgg > 1:4124604/1‑66 (MQ=255) gcCAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:2351784/71‑1 (MQ=255) gcCAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCa < 1:4718858/69‑1 (MQ=255) cAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:385702/69‑1 (MQ=255) gAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCAtt < 1:788284/71‑1 (MQ=255) tCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCa < 1:4893782/66‑1 (MQ=255) gTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCAtt > 1:3170889/1‑62 (MQ=255) gTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCAtt > 1:475544/1‑62 (MQ=255) aaCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:718584/55‑1 (MQ=255) aaCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTg > 1:2747920/1‑64 (MQ=255) aaCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTAtt < 1:4129574/70‑1 (MQ=255) aaCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTAtt < 1:4659871/70‑1 (MQ=255) aaCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCAACCATTGCCTGACTAtt < 1:2440518/70‑1 (MQ=255) aaCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCAACCATTGCCTGACTAtt < 1:201602/70‑1 (MQ=255) aCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTAtt < 1:180961/69‑1 (MQ=255) aCGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCAATGCCTGACTAtt < 1:694953/69‑1 (MQ=255) cgggcgggGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGc > 1:2918099/1‑50 (MQ=255) cgggcgggGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:2764083/53‑1 (MQ=255) cggggcgCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGaaa < 1:2041869/71‑1 (MQ=255) cgcTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCt < 1:43203/70‑1 (MQ=255) gcTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCAACCATTGCCt < 1:1392379/51‑1 (MQ=255) gcTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCAACCATTGCCt < 1:5080905/51‑1 (MQ=255) cTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATg < 1:4663372/61‑1 (MQ=255) cTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATg < 1:4501948/61‑1 (MQ=255) cTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATg < 1:2728311/61‑1 (MQ=255) tAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCAACCATTGCCTGa > 1:157344/1‑51 (MQ=255) tAATCATGCTGGAACTGAATTTTTCCCAGACGTTGAGCAACCATTGCCTGa > 1:1960794/1‑51 (MQ=255) aaTCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCg > 1:3640315/1‑71 (MQ=255) cATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:4411283/37‑1 (MQ=255) cATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:361854/37‑1 (MQ=255) cATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAc < 1:2791769/37‑1 (MQ=255) cATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGcc > 1:3408397/1‑70 (MQ=255) aTGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGaaa > 1:1559301/1‑58 (MQ=255) tGCTGGAACTGAATTTTTCCCAGACGTTGGGCAAcc < 1:443200/36‑1 (MQ=255) ggAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGa > 1:687883/1‑41 (MQ=255) gAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCAt < 1:1342409/71‑1 (MQ=255) aCTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCa > 1:4971091/1‑71 (MQ=255) tGAATTTTTCCCAGACGTTGAGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAAt < 1:2031860/62‑1 (MQ=255) gAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCa > 1:492679/1‑68 (MQ=255) gAATTTTTCCCAGACGTTGAGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATc < 1:1032835/67‑1 (MQ=255) aTTTTTCCCAGACGTTGAGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCAc > 1:4951892/1‑67 (MQ=255) tttCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCAc > 1:2082545/1‑64 (MQ=255) tCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCtt > 1:4044806/1‑71 (MQ=255) cccAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCtt < 1:1060978/70‑1 (MQ=255) ccAGACGTTGGGCAACCATTGCCTGACTATTAATGAAAc < 1:2801837/39‑1 (MQ=255) ccAGACGTTGGGCAACCATTGCCTGACTATTAATGAAAc < 1:4040033/39‑1 (MQ=255) aCGTTGGGCAACCATTGCCTGACTATTAATGAAAc < 1:5081135/35‑1 (MQ=255) gggCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTcc < 1:3393008/70‑1 (MQ=255) | GCTGGCCAGAATCAGCCGTGAACGGGCGGGGCGCTAATCATGCTGGAACTGAATTTTTCCCAGACGTTGGGCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCC > W3110S.gb/796937‑797074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |