| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,910,458 | 0 | A | G | 62.1% | 97.1 / 89.8 | 206 | V8A (GTT→GCT) | yobG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/78); new base G (0/128); total (0/206) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 209 total aligned reads displayed.
CGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAT > W3110S.gb/1910447‑1910511 | cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:40590/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:3250/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:77510/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:76342/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:34399/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:53803/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:75445/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:35761/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:73812/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:381/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:38572/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:33187/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:42071/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:71513/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:7013/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:69665/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:64995/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:51859/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:68562/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:49985/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:67279/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:51469/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:18340/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:59090/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:20202/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:63927/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:14609/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:24013/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:19618/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:24785/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:57145/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:80845/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:27444/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:28264/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:88299/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:12866/50‑1 (MQ=255)cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:16344/50‑1 (MQ=255) gACAACCAGAGCGACCCATCGAAAC‑‑TTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:83793/62‑1 (MQ=255) catccAGAGCGACCCATCGATACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:37411/59‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:64351/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:61518/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:52680/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:64695/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:61841/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:62525/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:63526/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:605/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:63813/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:68924/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:69626/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:72383/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:7284/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:75768/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:78245/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:79402/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:79792/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:81088/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:81820/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:83013/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:85374/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:87524/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:9470/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:27097/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:59880/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:35499/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:35269/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:34141/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:33987/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:30666/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:29751/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:28719/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:36448/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:26067/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:25363/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:23210/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:22736/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:15141/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:14463/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:14002/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:10689/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:50349/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:59207/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:58416/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:58044/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:56420/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:56231/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:54941/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:10396/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:52179/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:39217/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:48529/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:47299/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:46951/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:46359/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:44901/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:43881/62‑1 (MQ=255) cAACCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:43234/62‑1 (MQ=255) aaCCAGAGCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt < 1:74860/61‑1 (MQ=255) aaCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:75807/40‑1 (MQ=255) aCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCa < 1:5308/39‑1 (MQ=255) | CGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAT > W3110S.gb/1910447‑1910511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |