| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 786,588 | G→T | G178G (GGG→GGT) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 786,588 | 0 | G | T | 99.0% | 170.9 / NA | 97 | G178G (GGG→GGT) | aroG | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (0/96); total (0/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGTACCACCGAATCGCAGGTGCACCGCGAACTGGCATCAGGGCTTTCTTGTCCGGTCGGCT > W3110S.gb/786546‑786607 | aCGTACCACCGATTCGCTGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:44479/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGTACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:35872/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGTGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:4270/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:63607/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:64229/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:63297/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:62700/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:62442/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:59472/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:59055/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:57393/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:57291/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:56850/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:55905/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:55604/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:53221/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:51657/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:50688/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:50357/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:49638/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:47753/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:47513/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:4567/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:77674/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:9659/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:9172/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:88217/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:87447/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:87075/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:86783/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:85559/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:84591/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:82912/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:82243/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:12443/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:7728/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:75912/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:74205/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:71998/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:71707/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:70423/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:69631/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:67129/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:65920/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:64511/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:22057/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:3001/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:29534/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:40871/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:29198/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:2915/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:28782/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:26745/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:24547/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:2391/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:22300/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:22187/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:29288/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:21173/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:20888/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:19665/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:19006/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:17252/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:16465/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:16285/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:15682/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:1565/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:14517/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:10071/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:31480/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:3991/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:38336/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:37645/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:37461/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:36800/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:36369/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:35614/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:34376/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:32637/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:34072/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:34309/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggat < 1:37653/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCCTGTCAGGTAggtt < 1:69814/62‑3 (MQ=255)aCGTACCACCGAATCGCAGGTGCACAGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:22778/62‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:35134/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:82450/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:72917/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:85597/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:44679/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:3072/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:40648/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:40994/61‑3 (MQ=255) cGTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAgggt < 1:62256/61‑3 (MQ=255) gTACCACCGAATCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:39549/60‑3 (MQ=255) aaTCGCAGGTGCACCGCGAACTGGAGTCTGGGCTTTCTTGTCAGGTAggtt < 1:34313/51‑3 (MQ=255) aTCGCAGGTGCACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:34361/50‑3 (MQ=255) cACCGCGAACTGGCGTCTGGTCTTTCTTGTCAGGTAggtt < 1:4278/40‑3 (MQ=16) | ACGTACCACCGAATCGCAGGTGCACCGCGAACTGGCATCAGGGCTTTCTTGTCCGGTCGGCT > W3110S.gb/786546‑786607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |