| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 302,241 | G→A | P9P (CCG→CCA) | yagU → | conserved inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 302,241 | 0 | G | A | 97.1% | 57.6 / ‑6.7 | 34 | P9P (CCG→CCA) | yagU | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (0/33); minor base T (0/1); total (0/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAGATATGAATATATTTGAACAAACTCCACCGAACCGCA > W3110S.gb/302210‑302248 | tAGATATGAATATATTTGAACAAACTCCACCTAACCGCa < 1:74186/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:69910/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:16411/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:49310/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:51558/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:54894/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:56345/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:6136/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:68389/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:69341/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:49051/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:73204/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:76184/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:80504/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:83873/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:84252/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:84345/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:27311/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:16504/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:16513/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:17586/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:231/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:25825/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:26898/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:43809/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:30598/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:32355/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:33428/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:34843/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:38443/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:38886/39‑1 (MQ=255)tAGATATGAATATATTTGAACAAACTCAACCAAACCGCa < 1:23537/39‑1 (MQ=37) aGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:59378/38‑1 (MQ=255) aGATATGAATATATTTGAACAAACTCCACCAAACCGCa < 1:20706/38‑1 (MQ=255) | TAGATATGAATATATTTGAACAAACTCCACCGAACCGCA > W3110S.gb/302210‑302248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |