| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 3,281,782 | T→C | intergenic (+302/‑49) | agaA → / → agaS | predicted truncated N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,281,782 | 0 | T | C | 85.0% | 122.4 / 3.5 | 93 | intergenic (+302/‑49) | agaA/agaS | predicted truncated N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
| Reads supporting (aligned to +/- strand): ref base T (0/14); new base C (0/79); total (0/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCAT > W3110S.gb/3281724‑3281812 | tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:26638/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:65762/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:29739/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:32839/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:58835/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:40570/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:81211/61‑1 (MQ=255)tttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:4823/61‑1 (MQ=255) ttctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:78463/60‑1 (MQ=255) tctATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:41012/59‑1 (MQ=255) ataGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:37112/56‑1 (MQ=255) ataGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:36520/56‑1 (MQ=255) gATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:23013/53‑1 (MQ=255) gATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGa < 1:41124/53‑1 (MQ=255) cACCAAGTGAGATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:8180/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:59471/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:47157/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:47542/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:63308/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:47594/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:62076/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:6142/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:57621/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:68095/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:50386/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:47858/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:49918/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:78429/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:9247/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:87204/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:87084/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:85721/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:84907/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:84166/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:84065/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:83977/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:81480/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:81197/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:65726/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:77631/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:75695/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:73382/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:72734/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:7079/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:70212/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:68516/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:68453/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:44002/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:17769/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:23987/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:23480/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:47095/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:20930/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:20873/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:20536/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:1987/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:19856/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:24793/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:1704/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:16688/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:16575/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:16140/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:13658/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:15630/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:13913/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:13797/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:36576/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:12497/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:11059/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:41493/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:39757/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:38874/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:38773/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:37224/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:12672/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:25712/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:12679/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:35352/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:34537/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:33431/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:31821/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:29588/58‑1 (MQ=255) cACCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:27310/58‑1 (MQ=255) cACCAAGTGAAACGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:13420/58‑1 (MQ=255) aCCAAGTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:8681/57‑1 (MQ=255) gTGAAATGAAACGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:57544/52‑1 (MQ=255) gaaatgaaaCGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:21883/50‑1 (MQ=255) gaaatgaaaCGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:58505/50‑1 (MQ=255) aaatgaaaCGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:53882/49‑1 (MQ=38) aatgaaaCGAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:74395/48‑1 (MQ=38) gAAAGGCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:83526/40‑1 (MQ=37) aaaGCCAAGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:47352/39‑1 (MQ=25) ggCATGCGAAAGCGACAACG‑CCGACGTCAAGTtcat < 1:16882/36‑1 (MQ=21) | TTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCAT > W3110S.gb/3281724‑3281812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |