Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 3,624,185 | G→A | A107A (GCG→GCA) | metR → | DNA‑binding transcriptional activator, homocysteine‑binding |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 3,624,185 | 0 | G | A | 98.8% | 150.4 / ‑5.6 | 84 | A107A (GCG→GCA) | metR | DNA‑binding transcriptional activator, homocysteine‑binding |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (83/0); minor base T (1/0); total (84/0) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
GCGTCTGCGCATTGCCATTGAGTGCCATAGCTGTATTCAGTGGCTGACACCCGCGTTAGAAA > W3110S.gb/3624131‑3624192 | gcgcCTGCGCATTGCCATAGAGTGCCTTAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:2372/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCGGCATTAGaaa > 1:61673/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCTTTAGaaa > 1:46575/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:59689/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:68710/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:68032/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:67500/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:67172/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:66275/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:65197/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:62294/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:6035/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:71553/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:57201/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:54396/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:54028/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:53492/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:52175/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:51334/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:51185/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:5007/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:49977/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:81512/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:9180/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:9078/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:87623/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:85992/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:85822/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:85354/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:84414/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:83406/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:81918/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:49119/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:81209/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:77047/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:7636/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:75399/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:74781/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:74516/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:74443/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:73497/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:73206/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:22577/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:11947/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:28643/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:28527/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:28514/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:27712/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:27465/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:2493/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:24414/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:23986/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:28720/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:22388/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:20897/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:20660/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:19855/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:19074/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:14372/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:13236/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:12731/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:12428/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:3998/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:47526/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:47290/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:46792/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:45638/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:45398/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:44293/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:43832/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:42890/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:41474/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:31611/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:39489/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:37796/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:37171/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:37017/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:35697/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:34003/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:33107/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTATTAAGTGGCTGACGCCCGCATTAGaaa > 1:1574/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCATAGCTGTACTCAGTGGCTGACGCCCGCATTAGaaa > 1:39338/1‑62 (MQ=255) gcgcCTGCGCATTGCCATAGAGTGCCAAAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:72741/1‑62 (MQ=255) gcgcCTGCGCATTGCCAGAGAGTGCCATAGCTGTATTCAGTGGCTGACGCCCGCATTAGaaa > 1:65090/1‑62 (MQ=255) | GCGTCTGCGCATTGCCATTGAGTGCCATAGCTGTATTCAGTGGCTGACACCCGCGTTAGAAA > W3110S.gb/3624131‑3624192 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |