Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 1,104,888 | 2 bp→TC | coding (201‑202/456 nt) | csgA → | cryptic curlin major subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 1,104,888 | 0 | C | T | 100.0% | 94.4 / NA | 54 | D67D (GAC→GAT) | csgA | cryptic curlin major subunit |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/54); total (0/54) | |||||||||||
* | W3110S.gb | 1,104,889 | 0 | T | C | 100.0% | 99.5 / NA | 54 | L68L (TTG→CTG) | csgA | cryptic curlin major subunit |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/54); total (0/54) |
ACTTGCTCTGCAAACTGATGCCCGTAACTCTGACTTGACTATTACCCAGCATGGCGGCGG > W3110S.gb/1104855‑1104914 || tcTTGCTCTGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:32857/59‑1 (MQ=255) tctGCAAGCTTACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:87233/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTTATCTGACCATTACCCAGCAcggcggcgg < 1:18201/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:50384/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:44495/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:50455/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:50721/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:50780/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:54373/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:55313/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:57129/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:5766/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:60881/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:61097/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:61774/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:66905/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:69506/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:70260/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:71090/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:72151/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:73088/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:74036/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:77507/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:77537/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:7852/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:79270/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:83157/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:84255/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:31393/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:13141/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:1367/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:14084/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:14185/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:17130/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:21963/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:22355/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:23769/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:24544/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:26724/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:30568/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:1029/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:33251/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:33831/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:36039/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:3628/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:37144/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:38974/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:40065/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:41488/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:41489/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:42428/54‑1 (MQ=255) tctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:42816/54‑1 (MQ=255) tctGCAAGCTGACG‑CCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:15312/53‑1 (MQ=255) ctGCAAGCTGACGCCCGTAACTCTGATCTGACCATTACCCAGCAcggcggcgg < 1:54593/53‑1 (MQ=255) || ACTTGCTCTGCAAACTGATGCCCGTAACTCTGACTTGACTATTACCCAGCATGGCGGCGG > W3110S.gb/1104855‑1104914 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |