| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | W3110S.gb | 2,176,983 | Δ1,199 bp | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2176983–2178179 | 2178181 | 3–1199 | 53 [0] | [0] 51 | [gatA]–[gatA] | [gatA],insH,[gatA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2176982 | 0 (0.000) | 41 (0.940) | 7/100 | 0.4 | 100% | coding (71/321 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb | 2178182 = | 0 (0.000) | coding (202/315 nt) | gatA | galactitol‑specific enzyme IIA component of PTS | |||||
TCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176919‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTA > W3110S.gb/2178182‑2178240 TCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT > 1:3117830/1‑62 CATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT < 1:2237350/61‑1 CATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT < 1:4223289/61‑1 CATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT < 1:1686299/61‑1 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC > 1:1557550/1‑62 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC > 1:4384015/1‑62 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACAACTTAGC > 1:3194712/1‑62 TCCGCTTGCTGAAAATGAACTTTATTAGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:2208348/1‑61 TCCGCTTGCTGAAAAAGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC > 1:4356939/1‑62 GCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATG > 1:68159/1‑62 GCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATG > 1:1825148/1‑62 GCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATG > 1:379555/1‑62 GCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATG > 1:4657426/1‑62 GCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT > 1:2300487/1‑61 TGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC < 1:2631893/60‑1 TGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:4544141/1‑52 TGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:3027151/1‑52 TGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:2655061/1‑52 TGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:3956712/1‑52 TTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:4539355/62‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC < 1:2320942/47‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC < 1:4260366/47‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC < 1:716497/47‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC > 1:2084221/1‑61 AGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCT < 1:742938/61‑1 AGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCT < 1:748204/61‑1 AGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCT < 1:3126278/61‑1 AGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCT < 1:3120797/61‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:3992049/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:833730/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:1082047/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:1539925/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:1782553/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:1797350/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:814317/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:43269/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:2072332/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:2474823/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:1014933/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:2638763/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:3942703/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:370328/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:3425286/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:3263682/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:2967684/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:2980833/35‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:3093605/35‑1 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT > 1:2409136/1‑41 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT > 1:2671350/1‑41 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT > 1:1934700/1‑41 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:3104134/62‑1 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:710473/62‑1 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:4489555/62‑1 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:4149905/62‑1 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:2986944/62‑1 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:1018059/62‑1 TAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTA > 1:2022234/1‑62 TCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176919‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTA > W3110S.gb/2178182‑2178240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |