| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | W3110S.gb | 2,320,795 | Δ1,336 bp | insD–[rcsC] | insD, insC, [rcsC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2320795–2322124 | 2322130 | 7–1336 | 44 [0] | [0] 48 | insD–[rcsC] | insD,insC,[rcsC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2320794 | 0 (0.000) | 29 (0.680) | 6/98 | 0.5 | 100% | intergenic (‑59/+11) | rcsC/insD | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN/IS2 element protein |
| ? | W3110S.gb | 2322131 = | 0 (0.000) | coding (2368/2424 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2320741‑2320794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC > W3110S.gb/2322131‑2322188 CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:3707261/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:4043886/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:267453/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:2604691/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:2459036/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:3395052/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:2337163/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:3868253/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:2093733/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:4293747/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:4490336/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:457133/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:197669/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:1890092/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:1783664/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:1711535/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:57880/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:618816/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:1408593/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:63540/1‑49CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG > 1:1481053/1‑49 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:3261842/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:3690111/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:4131408/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:2583596/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:3440670/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:3628659/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG > 1:3515578/1‑62 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTC > 1:617786/1‑61 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTC > 1:3366123/1‑49 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA > 1:3376135/1‑62 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:2405724/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:3350144/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:3873493/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:2514565/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:2387900/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:2276671/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:4153022/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:1562338/1‑50 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:72916/1‑37 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCACGATCGTCGCTCTCCATCTCGATCAAATA > 1:2427627/1‑62 TTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACG < 1:3163144/62‑1 TTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACG < 1:1267885/62‑1 GACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGC < 1:1210245/54‑1 GACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGC < 1:1589981/54‑1 GACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGC < 1:1523439/54‑1 GACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGC < 1:1904457/54‑1 GACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCCATCAAATAAATACGC < 1:4642943/54‑1 ACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGC < 1:3704547/53‑1 CAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCC < 1:312562/61‑1 CAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATG > 1:4045691/1‑61 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:2086798/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:1983381/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:4559324/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:1014676/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:4264856/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:2242402/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:2944346/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:3600512/62‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:2060298/58‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:804958/58‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:930080/58‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:1646100/58‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:4373040/58‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:2669248/58‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:3830328/58‑1 CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2320741‑2320794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC > W3110S.gb/2322131‑2322188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |