| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744265 | 3744273 | 9–1336 | 46 [0] | [0] 42 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 39 (0.950) | 10/94 | 0.2 | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742875‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT > W3110S.gb/3744274‑3744328 GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:1737327/60‑1GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:4200932/60‑1 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG > 1:2120769/1‑62 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG > 1:1558371/1‑62 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:3461052/1‑61 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:1443414/1‑61 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:525657/1‑61 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:4018399/1‑61 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:4452828/1‑61 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:1939560/1‑61 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT < 1:966135/62‑1 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG > 1:1456702/1‑61 TTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:4353459/62‑1 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:1524807/61‑1 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1659761/1‑58 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:3705010/1‑58 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:2334677/1‑58 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:86660/1‑58 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:3238489/1‑58 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:2805592/1‑58 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG < 1:3729748/62‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:1322420/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:4414634/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:4685411/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:3582149/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:3124244/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:2565767/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:22286/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:2949587/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:1921307/52‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:1867658/52‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG < 1:2251017/62‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG < 1:2050901/62‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG < 1:1865466/62‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:1554362/51‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG < 1:2078398/51‑1 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:1248933/1‑52 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:1345426/1‑52 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:617967/1‑52 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:1828974/1‑52 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:4496199/1‑52 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:925186/1‑52 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:2566960/1‑52 CAACTTTGTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:4220945/1‑52 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGC < 1:3299572/62‑1 TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT < 1:432417/62‑1 TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT < 1:2665098/62‑1 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT < 1:2417680/62‑1 GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742875‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT > W3110S.gb/3744274‑3744328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |