| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 45 (0.940) | 26 (0.570) +TCA |
7/104 | 0.4 | 55.0% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 237 total aligned reads displayed.
GATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > W3110S.gb/314394‑314513 | gATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct > 1:689282/1‑62 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAcc > 1:1927240‑M1/55‑61 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAcc > 1:1991810‑M1/55‑61 (MQ=255) ggttttaccgtcttcgctgacttcacacttttcagcgaggcccgggatcactgaTCTTAcc > 1:1258847‑M1/55‑61 (MQ=255) tccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAcc > 1:2534727‑M1/54‑60 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:4370880/1‑61 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:3788378/1‑61 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:4543103/1‑61 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:3068407/1‑61 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:1031601/1‑61 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGc < 1:484900‑M1/11‑1 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGc < 1:2496220‑M1/11‑1 (MQ=255) aGAAAGACCCTCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:1807531/62‑1 (MQ=255) aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:194168/62‑1 (MQ=255) accgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:338841‑M1/49‑61 (MQ=255) ccgtcttcgctgacttcccccttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:3486045‑M1/15‑1 (MQ=255) ccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:2739257‑M1/15‑1 (MQ=255) ccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:824339‑M1/15‑1 (MQ=255) cgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:171892‑M1/47‑61 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac > 1:4302644‑M1/40‑62 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac > 1:2982416‑M1/40‑62 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac > 1:1848735‑M1/40‑62 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgcg > 1:3451707‑M1/37‑62 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgcg > 1:3545681‑M1/37‑62 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCct > 1:2122980/1‑35 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCct > 1:2364198/1‑35 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCct > 1:1184915/1‑35 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCct > 1:4546539/1‑35 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGaca < 1:1447137‑M1/22‑1 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgcg < 1:3019276‑M1/26‑1 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:4589128‑M1/27‑1 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:1460807‑M1/27‑1 (MQ=255) tctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:10291‑M1/32‑62 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:1528893/60‑1 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:1638805/60‑1 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:21698‑M1/30‑60 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:3655709‑M1/30‑60 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:1388923‑M1/30‑60 (MQ=255) ggTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:1903003/62‑1 (MQ=255) ggTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:2876969/62‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:2907865‑M1/30‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:1003225‑M1/30‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:4445969‑M1/30‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:624152‑M1/30‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:3369477‑M1/30‑1 (MQ=255) gaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1588144‑M1/19‑62 (MQ=255) gaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:479941‑M1/19‑62 (MQ=255) gaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:4290058‑M1/19‑62 (MQ=255) gaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:3835255‑M1/19‑62 (MQ=255) gaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:3840795‑M1/19‑62 (MQ=255) aagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1224602‑M1/18‑61 (MQ=255) agtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:37164‑M1/46‑1 (MQ=255) cccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:1200505‑M1/15‑62 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:2405270/1‑60 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:4145168/1‑62 (MQ=255) atcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTcagaa < 1:3144474‑M1/53‑2 (MQ=255) atcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:3785288‑M1/53‑1 (MQ=255) atcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:3601645‑M1/53‑1 (MQ=255) atcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:2253815‑M1/53‑1 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:1151657/54‑1 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:407479/54‑1 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCtcagt < 1:2666196/54‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:661297‑M1/57‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:1893432‑M1/57‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:1566321‑M1/5‑62 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:869089‑M1/5‑62 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:262292‑M1/4‑47 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:359179‑M1/4‑47 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3982582‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:1518110‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:2251332‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:4124453‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3319055‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3196384‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:2429608‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:4344727‑M1/59‑1 (MQ=255) gaTCTTACCCAGCATTAGTGGACACGCGGCTAAGTGAGTAAActct > 1:2064374‑M1/3‑46 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:3517783‑M1/3‑38 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:3022724‑M1/3‑38 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:2462725‑M1/3‑38 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:920592‑M1/3‑38 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:2772831‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:646512‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:1048831‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:3992002‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:395157‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:2683866‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1607276‑M1/3‑46 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:2799527‑M1/3‑46 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:1480773‑M1/52‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:1063745‑M1/52‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:4217394‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3664876‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3625768‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3430456‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:1059672‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:2857122‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:2703112‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:2106392‑M1/60‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCa < 1:744851‑M1/61‑1 (MQ=255) | GATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > W3110S.gb/314394‑314513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |