| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 5 (0.100) | 40 (1.180) | 7/78 | 0.3 | 85.5% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 10 (0.300) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > W3110S.gb/1211136‑1211249 | aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCg > 1:12648‑M2/61‑62 (MQ=255)aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCg > 1:520929‑M2/61‑62 (MQ=255)aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCg > 1:3145097‑M2/61‑62 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaacgc < 1:3783684‑M2/3‑2 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:3474283‑M2/3‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:809804‑M2/3‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:801709‑M2/3‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:767749‑M2/3‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:3766984‑M2/3‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:3751924‑M2/3‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:2125650‑M2/3‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:703760‑M2/7‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:429189‑M2/7‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:566907‑M2/7‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:1594804‑M2/7‑1 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:3623850/1‑61 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:2542252/1‑61 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:2547027/1‑61 (MQ=255) aaGGCCACGGAACCAGGACACCAACAAGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:472135/1‑61 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa > 1:1922880/1‑62 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:160245/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:4197231/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:1576896/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:4257517/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:437666/62‑1 (MQ=255) agccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:4624623‑M2/3‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:847664‑M2/22‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:4099506‑M2/22‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:61620‑M2/22‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaa < 1:73202‑M2/30‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaa < 1:4554597‑M2/30‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaa < 1:3136378‑M2/30‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaa < 1:2961523‑M2/30‑1 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATgg > 1:809677‑M2/28‑61 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:2504581‑M2/28‑62 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:2499185‑M2/28‑62 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:54723‑M2/28‑62 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:1947947‑M2/28‑62 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:36672‑M2/28‑62 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:1691430‑M2/28‑62 (MQ=255) gctccttctcccaaacaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:3770587‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:4305442‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:4134739‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:1727434‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:3641114‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:2149019‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:2434653‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:3328945‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:2613833‑M2/43‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 1:2727863‑M2/43‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:2569823‑M2/45‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:3813306‑M2/46‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:1414661‑M2/46‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:1431879‑M2/46‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:2944504‑M2/46‑1 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:2043956‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:2474488‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:2813604‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:4576510‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:3171073‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:3475523‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:3565999‑M2/15‑43 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:392344‑M2/15‑43 (MQ=255) ttctcccaaaccaaCCTATATGAAAATGAAGAAATa > 1:3365287‑M2/15‑36 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 1:3823186‑M2/9‑45 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa > 1:2493132‑M2/9‑62 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa > 1:1243612‑M2/9‑62 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa > 1:1990154‑M2/9‑62 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTACTGCTTTTa > 1:2059251‑M2/9‑59 (MQ=255) | TGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > W3110S.gb/1211136‑1211249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |