| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 5 (0.100) | 30 (0.890) | 6/78 | 0.3 | 81.6% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 10 (0.300) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
AAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCT > W3110S.gb/1211142‑1211239 | aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:3792303‑M2/44‑7 (MQ=255)aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:3623850/1‑61 (MQ=255)aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:2542252/1‑61 (MQ=255)aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:2547027/1‑61 (MQ=255)aaGGCCACGGAACCAGGACACCAACAAGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:472135/1‑61 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa > 1:1922880/1‑62 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:826923‑M2/62‑28 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:2132986‑M2/62‑28 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:2396771‑M2/62‑28 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:2560794‑M2/62‑28 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:1092030‑M2/62‑31 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:1543859‑M2/62‑31 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:991246‑M2/62‑31 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:437666/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:4257517/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:4197231/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:160245/62‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 1:1576896/62‑1 (MQ=255) aaCAGGTATTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat > 1:3502717‑M2/1‑16 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat > 1:3012288‑M2/1‑16 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:2103000‑M2/1‑13 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:1889317‑M2/1‑13 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:824763‑M2/1‑13 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:1771359‑M2/1‑13 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:3656610‑M2/1‑13 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:1663539‑M2/1‑13 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg > 1:3944874‑M2/1‑13 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:894372‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:78354‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:566363‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:1000096‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:993708‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:4514153‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:3904858‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:3650398‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:3227097‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:3040461‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:3034974‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc > 1:1636470‑M2/1‑5 (MQ=255) agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg > 1:3569752‑M2/1‑2 (MQ=255) agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg > 1:3079990‑M2/1‑2 (MQ=255) | AAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCT > W3110S.gb/1211142‑1211239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |