| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 52 (1.100) | 12/108 | 0.2 | 88.3% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 7 (0.150) | coding (91/213 nt) | cspA | major cold shock protein | |||||
ACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACC > W3110S.gb/3920217‑3920337 | cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:2672904‑M2/62‑62 (MQ=255)cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:1119138‑M2/62‑62 (MQ=255)acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:1702949/1‑62 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac > 1:3611646/1‑62 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac > 1:859544/1‑62 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac > 1:2286363/1‑62 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac > 1:3370393/1‑62 (MQ=255) gaacaatttgaaaacaataacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:3609658‑M2/3‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:3222151‑M2/3‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:1369254‑M2/3‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:241755‑M2/3‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:4039486‑M2/60‑60 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAacac < 1:2412742/62‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAacac < 1:399805/62‑1 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:2682349‑M2/3‑1 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg > 1:4610502‑M2/55‑61 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:56521‑M2/9‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:2618127‑M2/9‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1431177‑M2/10‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1216092‑M2/10‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:2817097‑M2/10‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1112932‑M2/10‑1 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac > 1:3428105‑M2/1‑53 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:2534727‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:2022755‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:1876403‑M2/1‑50 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:1589535‑M2/17‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:315652‑M2/17‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:824555‑M2/17‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:4590915‑M2/62‑15 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:152612‑M2/62‑15 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:484900‑M2/62‑15 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:2496220‑M2/62‑15 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:2599304‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:2604538‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:2842453‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:2887183‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:961386‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:2523732‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:3243482‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:324773‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:1797687‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:4186015‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:1356760‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:1190717‑M2/12‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:1114355‑M2/12‑1 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:1848735‑M2/1‑36 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:1590379‑M2/1‑36 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:4302644‑M2/1‑36 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:2982416‑M2/1‑36 (MQ=255) gcctgtgtccatattacgtgggttggatcACACATCTTTag < 1:962723‑M2/12‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc < 1:3970780‑M2/36‑1 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:888676‑M2/26‑61 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:10291‑M2/1‑28 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:103079‑M2/1‑28 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:3584600‑M2/1‑28 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:720957‑M2/18‑62 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:2335349‑M2/18‑62 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:1720066‑M2/18‑62 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTTAGGAGTGATGAAGCCGAAGCCttt > 1:4421629‑M2/16‑61 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:1974520‑M2/16‑61 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:2090627‑M2/16‑61 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:2572404‑M2/16‑61 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:2511125‑M2/16‑61 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:3715710‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:4685381‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:1488682‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:2306011‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:2406794‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:130170‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:3507384‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:1876061‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:3035721‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:3531450‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:1138112‑M2/14‑57 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:875181‑M2/14‑57 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:245664‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:1588144‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:1321738‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:479941‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:4290058‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:3840795‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:3835255‑M2/1‑15 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:3782920‑M2/1‑15 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:1224602‑M2/1‑14 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca < 1:37164‑M2/62‑50 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca < 1:2763139‑M2/62‑50 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAcc > 1:1588174‑M2/3‑62 (MQ=255) | ACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACC > W3110S.gb/3920217‑3920337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |