| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 548,801 | G→A | pseudogene (1221/1259 nt) pseudogene (964/1002 nt) |
ylbE → ylbE → |
ECK0512:JW0508+JW0507:b4572; hypothetical protein ECK0512:JW0508:b0519; hypothetical protein, C‑ter fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 548,801 | 0 | G | A | 100.0% | 244.7 / NA | 74 | pseudogene (1221/1259 nt) pseudogene (964/1002 nt) | ylbE ylbE | ECK0512:JW0508+JW0507:b4572; hypothetical protein ECK0512:JW0508:b0519; hypothetical protein, C‑ter fragment |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/45); total (29/45) | |||||||||||
CGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCA > W3110S.gb/548742‑548859 | cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGTCACCGCTGGCGTGCTTTGAACAGacg < 1:1478009/62‑1 (MQ=255)cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg < 1:4382594/62‑1 (MQ=255)cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg < 1:2327615/62‑1 (MQ=255)cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg < 1:1315965/62‑1 (MQ=255)cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg < 1:3940748/62‑1 (MQ=255)cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg < 1:116556/62‑1 (MQ=255)cGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg < 1:3990067/62‑1 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:1563209/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:2725975/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:2882689/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:3213521/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:3266776/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:1689319/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:3282677/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:3743502/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:446682/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:965081/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc < 1:470465/62‑1 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:4223275/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:1456423/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:1259335/1‑62 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc < 1:4139297/62‑1 (MQ=255) ggggATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc < 1:1256532/62‑1 (MQ=255) ggggAACGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGacgc > 1:990239/1‑62 (MQ=255) gATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:1381467/62‑1 (MQ=255) ccGTGCGGGCACCGCTGGCGTGCTTTGAACAGacg > 1:972990/1‑35 (MQ=255) ccGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGaaa > 1:2842492/1‑54 (MQ=255) ccGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGt > 1:562938/1‑62 (MQ=255) ccGTGCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGt > 1:2891008/1‑62 (MQ=255) gCGGTCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:2001851/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:544772/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:355975/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:1015789/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:1580049/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:1920917/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:1111272/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:1579170/62‑1 (MQ=255) gCGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:1112257/62‑1 (MQ=255) cGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTgg > 1:4265584/1‑62 (MQ=255) cGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg > 1:1062971/1‑61 (MQ=255) cGGGCACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTg < 1:4093506/61‑1 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:3626017/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:48350/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:2005333/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:3297569/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:926759/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:3572838/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:281401/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:3780319/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:2664801/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:3663910/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:2519113/1‑61 (MQ=255) cACCGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:1028919/1‑61 (MQ=255) cACCGCTAGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTg > 1:1206227/1‑61 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:1548144/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:3809346/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:3254269/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:3155284/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:3028076/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:2235266/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:2236381/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:2726992/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:627729/37‑1 (MQ=255) ccGCTGGCGTGCTTTGAACAGACGCTGGAAGCACTgg < 1:25461/37‑1 (MQ=255) cTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAAc < 1:2446402/62‑1 (MQ=255) cTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAAc < 1:1365309/62‑1 (MQ=255) cTGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAAc < 1:3014811/62‑1 (MQ=255) tGGCGTGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAAc < 1:4673471/61‑1 (MQ=255) tGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:3946064/62‑1 (MQ=255) tGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:2188659/62‑1 (MQ=255) tGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:2700304/62‑1 (MQ=255) tGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:570641/62‑1 (MQ=255) tGCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:2403888/62‑1 (MQ=255) gCTTTGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:4003160/61‑1 (MQ=255) ttGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGAc < 1:3649734/62‑1 (MQ=255) ttGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGAc < 1:3644288/62‑1 (MQ=255) ttGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGAc < 1:2984240/62‑1 (MQ=255) ttGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGAc < 1:4473752/62‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAAc < 1:575721/51‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:994418/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:2462120/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:1024808/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:1326129/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:4365226/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:2585865/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:3289147/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:3970998/57‑1 (MQ=255) tGAACAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCaa < 1:4347491/57‑1 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGCCGatca > 1:2010695/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatca > 1:3778784/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatca > 1:3101840/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatca > 1:2320908/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatca > 1:728796/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatca > 1:806698/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatca > 1:4419355/1‑62 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatc > 1:4037226/1‑61 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatc > 1:2284343/1‑61 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGatc > 1:1408684/1‑61 (MQ=255) cAGACGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGat > 1:1155654/1‑60 (MQ=255) | CGGGGATCGGGCAGATTGGCGCAGGCACCGTGCGGGCACCGCTGGCGTGCTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCA > W3110S.gb/548742‑548859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |