Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2874648	2874993	346	81 [0]	[0] 15	[cysD]	[cysD]

CACCGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCATA  >  W3110S.gb/2874586‑2874647                                                              | caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:511308/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:641645/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:617356/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:602436/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:567651/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:554613/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:549879/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:546850/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:523218/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:513278/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:645970/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:498406/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:455375/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:44188/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:430052/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:42240/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:421960/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:412944/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:399939/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:398974/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:81258/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:963649/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:951027/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:90224/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:900831/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:893359/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:885903/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:848029/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:842339/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:830951/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:319720/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:800605/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:785519/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:742847/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:737144/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:735265/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:733288/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:679312/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:667189/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:110767/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:295939/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1182717/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1181846/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1172868/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1162400/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1139943/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1127984/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1123160/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1110874/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1238438/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1071470/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1065088/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1047677/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1039921/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1039737/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1031222/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1026972/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1025520/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1008496/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1363493/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:213840/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:213005/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:186896/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:182696/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:17650/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:234818/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:276355/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1348910/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1341843/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1335930/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1303841/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1301012/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:126062/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1272637/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1267168/62‑1 (MQ=255) caccGAAGGCGGCATCAAAACCGTATTCGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1435860/62‑1 (MQ=255)  accGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:100167/61‑1 (MQ=255)  accGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:650979/61‑1 (MQ=255)        ggcggcATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:1095017/55‑1 (MQ=255)                       gTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:231203/40‑1 (MQ=255)                         aTTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCata  <  1:462503/38‑1 (MQ=255)                                                              | CACCGAAGGCGGCATCAAAACCGTATTTGTTCAGCGCCTGTTTCAGGCCTTCAGTTTTCATA  >  W3110S.gb/2874586‑2874647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑