Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2889049	2889135	87	35 [0]	[0] 10	cysJ	sulfite reductase, alpha subunit, flavoprotein

TGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTG  >  W3110S.gb/2888990‑2889048                                                           | tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:818258/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:808083/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:803427/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:782077/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:760465/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:718396/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:699396/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:653082/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:550811/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:469298/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:452091/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:44420/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:42766/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:412365/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:405197/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1006493/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1465039/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1449785/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1396209/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:888392/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1316057/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1292321/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1247984/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1218583/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1197673/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1194028/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1192087/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1138456/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:112062/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1081434/59‑1 (MQ=255) tGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:950029/59‑1 (MQ=255)  gATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:37864/58‑1 (MQ=255)  gATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:317388/58‑1 (MQ=255)  gATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1070482/58‑1 (MQ=255)           aCCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTg  <  1:1336842/49‑1 (MQ=255)                                                           | TGATCGCGCGACCAGGCAAGATCGATACGTGTCAGCACGCCATCTTTGACGTAGCGCTG  >  W3110S.gb/2888990‑2889048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑