Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3039125	3039142	18	57 [0]	[0] 69	ygfX	hypothetical protein

CCGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAG  >  W3110S.gb/3039063‑3039124                                                              | ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:713707/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:303159/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:304229/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:328343/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:428776/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:453359/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:474000/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:535636/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:53650/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:582476/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:605425/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:656771/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:683181/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:693571/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:71370/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:290537/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:717999/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:721910/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:744554/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:774265/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:853053/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:861488/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:895523/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:951286/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:954545/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:959493/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:965051/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:993310/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:996628/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1240696/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:101185/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1068018/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1068894/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:110156/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:110430/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1120427/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1148776/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1151498/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1160200/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1224163/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1226448/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1235446/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1237270/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1007416/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1279295/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1308393/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1366277/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1419295/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1420279/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1433292/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1442849/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:1455665/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:146127/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:158207/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:268844/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAg  >  1:29049/1‑62 (MQ=255) ccGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCAATTCAg  >  1:1355170/1‑62 (MQ=255)                                                              | CCGTCATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAG  >  W3110S.gb/3039063‑3039124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑