Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3072734	3072980	247	48 [0]	[0] 24	yggC	conserved hypothetical protein with nucleoside triphosphate hydrolase domain

ATCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCG  >  W3110S.gb/3072675‑3072733                                                           | aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:499446/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:261364/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:29577/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:33161/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:333230/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:386435/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:396263/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:414689/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:436650/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:460303/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:490330/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:31825/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:544272/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:549402/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:617423/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:622996/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:719749/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:759516/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:767485/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:893747/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:907675/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:98959/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:168953/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1022806/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1101446/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:112250/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1197280/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1200365/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1225525/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:138039/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1396774/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1403464/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1406304/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:14076/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1438283/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1444914/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:14588/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:156786/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:161777/59‑1 (MQ=255) aTCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:186072/59‑1 (MQ=255)  tCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:554120/58‑1 (MQ=255)  tCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCAGCGGTGCg  <  1:1095474/58‑1 (MQ=255)     gATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:537530/55‑1 (MQ=255)     gATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1046883/55‑1 (MQ=255)      aTTGGCCTGACGGGTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:5056/54‑1 (MQ=255)               aCGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1019737/45‑1 (MQ=255)               aCGGCTATTCATCACCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:52764/45‑1 (MQ=255)                 ggCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCg  <  1:1310344/43‑1 (MQ=255)                                                           | ATCAGATTGGCCTGACGGCTATTCATCAGCACACGCTCGACATTGGGGCCATCGGTGCG  >  W3110S.gb/3072675‑3072733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑