Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3116249	3116454	206	29 [0]	[1] 51	yghJ	predicted inner membrane lipoprotein

TAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGTTT  >  W3110S.gb/3116187‑3116248                                                              | tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:468208/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:994375/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:980524/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:931380/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:870708/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:858709/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:855219/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:836343/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:816243/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:790626/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:725182/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:682078/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:587406/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:522896/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:492574/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:455559/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:449791/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:387669/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:385858/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:375866/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:304210/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:29026/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:1365153/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:1204862/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:1187906/62‑1 (MQ=255) tAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:1153383/62‑1 (MQ=255)  aaTGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:1117513/61‑1 (MQ=255)  aaTGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:189873/61‑1 (MQ=255)       aCGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGttt  <  1:21028/56‑1 (MQ=255)                                                              | TAATGTACGCCAGCTCGTTTTTATCCCAGGCGCGTTTTTCGCCGAAGGCCAGCCAGTAGTTT  >  W3110S.gb/3116187‑3116248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑