Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3212646	3213054	409	75 [0]	[0] 63	rpoD	RNA polymerase, sigma 70 (sigma D) factor

GCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCT  >  W3110S.gb/3212586‑3212645                                                            | gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:563426/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:6784/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:678380/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:674682/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:643200/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:642370/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:622028/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:588833/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:567866/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:682379/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:561596/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:539873/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:533478/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:529059/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:524301/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:490526/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:459617/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1013671/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:901990/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:996239/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:980704/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:974993/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:955722/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:924743/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:912225/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:910385/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:906697/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:428438/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:891102/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:854208/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:842198/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:788801/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:770402/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:763347/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:757846/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:703238/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1146869/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:391971/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1245125/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1229345/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1229170/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1208794/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:117331/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1165312/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1148338/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1286780/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1132225/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1108020/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1083102/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:107572/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1075516/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1055417/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:105530/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1028775/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1316588/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:391027/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:342877/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:341130/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:305042/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:291331/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:275623/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:212697/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:189331/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:169206/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:163949/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:160670/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1442448/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1441069/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1366200/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1334790/60‑1 (MQ=255) gCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1306175/60‑1 (MQ=255)  cAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:827512/59‑1 (MQ=255)  cAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:501024/59‑1 (MQ=255)   aaaaTGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:878914/58‑1 (MQ=255)                       cATTACCCTGTTTACCGGCAACGAAACCAGCGATACCt  <  1:1123779/38‑1 (MQ=255)                                                            | GCAAAATGCCGAAGAAAAACTTCATTACCCTGTTTACCGGCAACGAAACCAGCGATACCT  >  W3110S.gb/3212586‑3212645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑