Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3217153	3217536	384	43 [0]	[0] 20	aer	fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component

ATTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACG  >  W3110S.gb/3217091‑3217152                                                              | aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTGACg  >  1:129251/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:679051/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:384861/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:397505/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:412430/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:445066/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:493573/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:528625/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:568851/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:57290/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:656463/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1047357/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:697238/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:739132/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:806439/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:81606/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:826525/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:8303/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:83660/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:886230/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:897656/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:943201/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1271033/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1018538/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1062062/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1063165/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1086526/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1093522/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1132332/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1238164/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1245110/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1262969/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1263545/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:300103/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1275824/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1329306/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1364024/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1369278/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:137802/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:1421555/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:18829/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACg  >  1:246237/1‑62 (MQ=255) aTTTTCTATCGGGCGCACAATCTGCCATTCAAAACACGCGCTTGCCAACAATACCACTAACg  >  1:286881/1‑62 (MQ=255)                                                              | ATTTTCTATCGGGCGCACAATCTGCCATTCAAAACAGGCGCTTGCCAACAATACCACTAACG  >  W3110S.gb/3217091‑3217152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑