Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3524325	3524389	65	81 [0]	[0] 37	[yiiR]	[yiiR]

GCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTCC  >  W3110S.gb/3524270‑3524324                                                       | gCACCAGCATGCCTGCGAACCACAGGGCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1024202/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:395250/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:597294/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:59533/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:58925/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:568376/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:564866/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:558753/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:552068/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:536784/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:5186/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:474182/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:599599/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:390745/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:378201/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:353695/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:336312/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:320646/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:318762/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:297912/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:247994/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:742562/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:955986/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:936694/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:901868/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:861011/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:849027/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:838086/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:787797/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:762059/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:752543/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:599189/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:725226/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:711848/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:710976/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:682372/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:672885/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:651401/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:609538/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:606323/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:218826/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1192171/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1313431/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:131218/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1268522/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1222973/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1217756/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:121426/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1212408/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:119663/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1192349/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1362538/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1162072/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1155238/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1108772/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1102455/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1050581/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1046281/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1034932/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1033720/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1016461/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1437145/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:101342/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:215627/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:21176/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:196804/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:184581/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:184386/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:153065/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:15090/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:150158/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:228554/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1428497/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1402239/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1394813/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:139184/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1391585/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1391292/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1388856/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1377733/1‑55 (MQ=255) gCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTcc  >  1:1362650/1‑55 (MQ=255)                                                       | GCACCAGCATGCCTGCGAACCACAGGCCTATCCAAATCCAGAAATCACGGCGTCC  >  W3110S.gb/3524270‑3524324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑