Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3536119	3536199	81	39 [0]	[0] 5	[rhaT]	[rhaT]

GGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCTCGTCG  >  W3110S.gb/3536064‑3536118                                                       | ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:618850/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:225757/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:344262/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:352132/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:386798/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:440712/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:446799/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:495997/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:556895/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1028590/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:62291/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:661955/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:711228/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:782322/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:861268/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:898660/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:908273/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:925826/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1194585/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1000933/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:103494/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1064343/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1068327/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1095765/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1128464/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1131211/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1134308/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1168394/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:212143/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1213284/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1324093/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1365243/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:1435298/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:173097/55‑1 (MQ=255) ggcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:198943/55‑1 (MQ=255)  gcggcAACAGGCGAAAGTTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:490531/54‑1 (MQ=255)  gcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:879997/54‑1 (MQ=255)  gcggcAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:268933/54‑1 (MQ=255)   cggcAACAGGCGAAAGGTTTATCGACAGCACGATTTTTACACTCATCtcgtcg  <  1:411612/53‑1 (MQ=255)                                                       | GGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCTCGTCG  >  W3110S.gb/3536064‑3536118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑