Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3817198	3817247	50	43 [1]	[2] 38	spoT	bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase

AGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGATAAC  >  W3110S.gb/3817138‑3817200                                                            |    aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:72269/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:494753/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:546000/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:632409/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:657335/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:662284/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:666024/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:672288/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:673202/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:684849/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:709050/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1040786/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:780884/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:805566/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:824314/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:840600/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:843117/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:911617/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:930196/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:95302/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:956299/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:411527/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1016954/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:107389/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1093871/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1115310/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1156286/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1187069/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1198442/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:121946/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1221854/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1242405/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1278390/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1399096/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1414084/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:1441480/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:167373/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:232781/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:27293/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:322201/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:3829/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGAt     >  1:420984/1‑60 (MQ=255) aGTCTTTCACGCGGCCCGGACGCGGCTT‑TACAGGCTGTGCATCTGGCCCAGCACGCGATAAc  >  1:95982/1‑62 (MQ=255)                                                            |    AGTCTTTCACGCGGCCCGGACGCGGCTTGTACAGGCTGTGCATCTGGCCCAGCACGCGATAAC  >  W3110S.gb/3817138‑3817200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑