Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3834977	3835028	52	25 [0]	[0] 12	rfaP	kinase that phosphorylates core heptose of lipopolysaccharide

GCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTT  >  W3110S.gb/3834916‑3834976                                                             | gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:374629/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:990419/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:982648/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:898667/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:811730/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:728081/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:658285/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:644658/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:589334/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:58597/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:508806/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:1006887/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:353747/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:283240/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:255268/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:194551/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:162028/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:152052/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:150632/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:1451445/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:1055300/61‑1 (MQ=255) gCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:102510/61‑1 (MQ=255)  cGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:484511/60‑1 (MQ=255)  cGTAAAATGCATACTGCAGGGATAAATCACCGCGACCGTTACATTTGCCACTTTTTGCtt  <  1:164567/60‑1 (MQ=255)     aaaaTGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCtt  <  1:743057/57‑1 (MQ=255)                                                             | GCGTAAAATGCATACTGCAGGGATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTT  >  W3110S.gb/3834916‑3834976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑