Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3977026	3977040	15	47 [0]	[0] 66	mdtF	multidrug transporter, RpoS‑dependent

CTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCG  >  W3110S.gb/3976964‑3977025                                                              | cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCTCGTTTTGCGCGCCAGAACCg  <  1:116101/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:826572/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:605424/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:191502/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:21313/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:758917/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:319012/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:707351/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:395346/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:413051/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:428329/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:435134/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:481269/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:49424/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:51195/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:521098/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:527324/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:155129/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:153925/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:151144/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:164359/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1180784/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1183480/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1318779/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1300421/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1267738/62‑1 (MQ=255) cTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:11977/62‑1 (MQ=255) cTGTTGCGGCAAACATCACGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:15537/62‑1 (MQ=255)  tGTTGCGGCAATCATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:736682/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:947373/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1074837/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:90339/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:895343/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:873234/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:360961/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:351751/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:281020/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1442085/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1376731/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1236811/61‑1 (MQ=255)  tGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTATTGCGCGACAGAACCg  <  1:552526/61‑1 (MQ=255)  tGTTGCGGCAAACATCACGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:17344/61‑1 (MQ=255)    ttGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:7676/59‑1 (MQ=255)      gCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:828263/57‑1 (MQ=255)         gCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:728069/54‑1 (MQ=255)              cATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:1427378/49‑1 (MQ=255)                       cATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCg  <  1:723614/40‑1 (MQ=255)                                                              | CTGTTGCGGCAAACATCCCGCCCATCACGCCGGTACCTACCGCGTTTTGCGCGCCAGAACCG  >  W3110S.gb/3976964‑3977025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑