Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4143760	4143963	204	8 [0]	[0] 71	[nirD]–[nirB]	[nirD],[nirB]

CCGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATC  >  W3110S.gb/4143698‑4143759                                                              | ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:1127092/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:1137162/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:1366309/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:1422513/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:51052/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:562187/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATc  <  1:727102/62‑1 (MQ=255) ccGCGTGACAGCACGCTGGACTCGAAGAACGGGGCGATGTTGCTGATCGCAAACACCTGATc  <  1:230051/62‑1 (MQ=255)                                                              | CCGCGTGACAGCACGCTGGACTCGAAGAACGGGTCGATGTTGCTGATCGCAAACACCTGATC  >  W3110S.gb/4143698‑4143759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑