Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	489497	489586	90	51 [0]	[0] 70	[priC]	[priC]

CCAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACATA  >  W3110S.gb/489435‑489496                                                              | ccAGCAGCACAATCAAATCGTCAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:353281/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCGGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:104081/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGGTTTTTCCAGTGACata  <  1:1051794/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:504061/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:970804/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:521715/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:564737/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:61086/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:621747/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:628223/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:646667/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:741876/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:743112/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:754929/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:776975/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:805997/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:816388/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:822242/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:826036/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:833966/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:870920/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:881878/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:889975/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:902794/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:912169/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:958606/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:969075/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:475371/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1046822/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:107819/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1096434/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1118137/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1120708/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1185696/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1241344/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1278770/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1291142/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1321946/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1367399/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:162659/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:26759/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:279787/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:355972/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:411396/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:446949/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:466279/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:502945/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCAAGTGACata  <  1:1436158/62‑1 (MQ=255) ccAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGAATTTTCCAGTGACata  <  1:1087609/62‑1 (MQ=255)  cagcagCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1363550/61‑1 (MQ=255)                aaTCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACata  <  1:1019589/47‑1 (MQ=255)                                                              | CCAGCAGCACAATCAAATCGACAGCCAGTTTGACATCGTCAGGGGCATTTTCCAGTGACATA  >  W3110S.gb/489435‑489496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑