Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	559606	559635	30	61 [0]	[0] 8	sfmD	predicted outer membrane export usher protein

GCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGA  >  W3110S.gb/559549‑559605                                                         | gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATTGATATCATTCAGa  <  1:804345/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:7332/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:100710/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:520343/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:526777/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:542015/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:547953/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:570643/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:578642/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:578752/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:586064/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:590630/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:613484/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:691842/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:705379/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:716229/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:508144/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:754087/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:79237/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:798037/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:806250/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:814885/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:824673/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:829613/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:846697/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:873644/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:920718/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:926388/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:939492/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:954698/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1442115/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1023866/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1038608/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1048297/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1069997/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:116929/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1180859/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1189216/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:122185/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1225110/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1259909/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1261339/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1277939/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1297346/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1341519/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1448339/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1469070/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:25189/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:256357/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:260583/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:30832/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:313841/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:322468/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:350580/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:352406/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:406718/57‑1 (MQ=255) gCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:430756/57‑1 (MQ=255)  cGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:470355/56‑1 (MQ=255)         gCAACAATGGTTCCTGTAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:705196/49‑1 (MQ=255)             caaTGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:1208399/45‑1 (MQ=255)               aTGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGa  <  1:575412/43‑1 (MQ=255)                                                         | GCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGA  >  W3110S.gb/559549‑559605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑