Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	564727	565147	421	22 [0]	[0] 31	intD	predicted integrase

TCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTGCAG  >  W3110S.gb/564665‑564726                                                              | tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:247089/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:978365/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:940696/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:923561/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:865555/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:781017/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:75429/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:719366/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1099759/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:241436/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:239041/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:157614/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1452391/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1371215/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1369841/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1346602/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1220245/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1151203/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:1105129/62‑1 (MQ=255) tCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGGTCTgcag  <  1:650646/62‑1 (MQ=255)                      gaCAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:4205/41‑1 (MQ=255)                            cgcTTTTTCCAGCCACTTCCAGTCGCGTTCTgcag  <  1:924811/35‑1 (MQ=255)                                                              | TCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTTCTGCAG  >  W3110S.gb/564665‑564726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑