Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1190352	1190873	522	36 [0]	[0] 68	phoQ	sensory histidine kinase in two‑compoent regulatory system with PhoP

ACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCG  >  W3110S.gb/1190291‑1190351                                                             | acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:635848/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1014705/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:410907/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:484794/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:611978/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:613633/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:62643/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:627543/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:63129/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:37633/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:663710/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:664564/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:700326/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:860058/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:88393/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:890016/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:892871/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:97750/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1335321/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1032041/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1033955/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1073282/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1085815/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:111782/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1296035/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1322368/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:364525/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:1375365/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:258273/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:265601/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:304011/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:326436/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:332670/61‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGGGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:333811/61‑1 (MQ=255)        gTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTcgcg  <  1:458676/54‑1 (MQ=255)                          aTTGTCCAGCAGTGGGGCGACCGGAGGCAGCTcgcg  <  1:1107211/36‑1 (MQ=255)                                                             | ACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCG  >  W3110S.gb/1190291‑1190351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑