Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1414242	1414431	190	43 [0]	[0] 56	intR	integrase

GTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGC  >  W3110S.gb/1414180‑1414241                                                              | gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCTAGAGc  >  1:351102/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:530902/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:324082/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:324354/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:340032/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:34028/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:380961/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:399394/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:472742/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:497301/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:520677/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1061539/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:535877/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:578498/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:621332/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:62872/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:63450/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:651440/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:820021/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:831762/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:92374/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:203395/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1024667/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1072494/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1080456/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1090679/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1102300/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1124569/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1179085/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1218006/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:122667/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1268069/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1272079/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1363592/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1415263/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1426761/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1428774/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:1469819/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:157053/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:193948/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGc  >  1:22941/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCCCCCACGCCAGAGc  >  1:1128035/1‑62 (MQ=255) gTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATACACATCCTCCCACGCCAGAGc  >  1:928213/1‑62 (MQ=255)                                                              | GTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGC  >  W3110S.gb/1414180‑1414241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑