Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1430645	1430675	31	5 [0]	[0] 40	lomR lomR	ECK1366:JW5884+JW5904:b4570; Rac prophage region; hypothetical protein ECK1366:JW5904:b1371; Rac prophage region; hypothetical protein, C‑ter fragment

ACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGC  >  W3110S.gb/1430598‑1430644                                               | aCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGc  >  1:1172700/1‑47 (MQ=255) aCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGc  >  1:1288141/1‑47 (MQ=255) aCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGc  >  1:325354/1‑47 (MQ=255) aCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGc  >  1:398784/1‑47 (MQ=255) aCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGc  >  1:828003/1‑47 (MQ=255)                                               | ACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGC  >  W3110S.gb/1430598‑1430644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑