Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1561213	1561227	15	45 [0]	[0] 22	ddpC	D‑Ala‑D‑Ala transporter subunit

GTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCG  >  W3110S.gb/1561151‑1561212                                                              | gTTAAACAAACTCGGGCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:524491/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:240455/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1102340/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:242541/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:244601/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:262909/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:345149/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:350693/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:354113/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:362618/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:413127/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:456176/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:492257/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:552783/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:582446/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:617908/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:625218/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:810584/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:810607/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:846806/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:909201/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:924209/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:946371/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:202069/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1105449/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1109789/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1115918/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1159052/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1193572/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1217797/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1221931/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1243508/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1252825/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1278432/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1284932/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1306820/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1311287/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1326846/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1371024/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1387051/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1430929/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1458214/62‑1 (MQ=255) gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:18441/62‑1 (MQ=255)  ttAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:222243/61‑1 (MQ=255)           cTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCg  <  1:1038000/52‑1 (MQ=255)                                                              | GTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCG  >  W3110S.gb/1561151‑1561212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑